Non-Coding RNA Search

Ss1.1-Thy1-THY010205H07.5

Sequence:


               
               AGTGTTTTTGTTTTGGGTTGAAGTTGAGGCGGAGGAGAGAGAAGAGCTAGCGACAAGCAG
TCGTCGCCACCGCCGCGGGAGGCGGAGGAGGCCCTGCGGGATTCAAGAGGTCTCCCCTCC
CCGCCGACGGCTCTTGCCCGCCGTTCCTCTGCCTCCTCCCGGTGCCGGAACTCCCGGGCC
TGCCCCGGGCCCCCAGTCTTTGCCCTCCACACGCCGCAGCGCCCGGCCCCGGCCGCACCC
GCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAGATGTTCTCA
AATAGTGATGAAGCTGTAATCAATAAAAAACTTCCCAAAGAACTCCTATTACGGATATTT
TCTTTTCTGGATGTTGTTACCTTGTGTCGCTGTGCTCAAGTCTCCAGGGCCTGGAATGTT
CTGGCTCTGGATGGCAGTAACTGGCAGCGAATTGACCTGTTTGATTTCCAGAGAGATATT
GAGGTATAATTACGTGGTGTGTGGCCCCATTTCTCTTGTTAGAATGTAATTACAGCAGGA
GACAGATTAGCCCCCAACCATATAAATCTCCTTTCCCTGGAGAGACAAACTATTAATTTC
AGTGCACCTGAACCTCATGGGAGTCTGCAGTGTTCCCAGGAACTTGTTCAGTTTTGAGAA
TGAGCAGAATTATTTTACTGACGTAATACTAAATTGTTTAGTATTAACAAGACTCAAAAA
GTTTTGTTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTTTTTGTTTTGGGTTGAAGTTGAGGCGGAGGAGAGAGAAGAGCTAGCGACAAGCAG
TCGTCGCCACCGCCGCGGGAGGCGGAGGAGGCCCTGCGGGATTCAAGAGGTCTCCCCTCC
CCGCCGACGGCTCTTGCCCGCCGTTCCTCTGCCTCCTCCCGGTGCCGGAACTCCCGGGCC
TGCCCCGGGCCCCCAGTCTTTGCCCTCCACACGCCGCAGCGCCCGGCCCCGGCCGCACCC
GCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAGATGTTCTCA
AATAGTGATGAAGCTGTAATCAATAAAAAACTTCCCAAAGAACTCCTATTACGGATATTT
TCTTTTCTGGATGTTGTTACCTTGTGTCGCTGTGCTCAAGTCTCCAGGGCCTGGAATGTT
CTGGCTCTGGATGGCAGTAACTGGCAGCGAATTGACCTGTTTGATTTCCAGAGAGATATT
GAGGTATAATTACGTGGTGTGTGGCCCCATTTCTCTTGTTAGAATGTAATTACAGCAGGA
GACAGATTAGCCCCCAACCATATAAATCTCCTTTCCCTGGAGAGACAAACTATTAATTTC
AGTGCACCTGAACCTCATGGGAGTCTGCAGTGTTCCCAGGAACTTGTTCAGTTTTGAGAA
TGAGCAGAATTATTTTACTGACGTAATACTAAATTGTTTAGTATTAACAAGACTCAAAAA
GTTTTGTTAGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               594-707, + strand, RNAz p=0.888921

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               594-707, + strand, RNAz p=0.888921

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-295, gnl|bosTau2|chr19 (32923187-32922900)
               

               
               1-295, gnl|Hg17|chr17 (34811438-34811136)
               

               
               1-295, gnl|Mm7|chr11 (98258654-98258351)
               


               
               408-707, gnl|bosTau2|chr19 (34697429-34697729)
               

               
               408-707, gnl|Hg17|chr17 (34710855-34710558)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-295, gnl|bosTau2|chr19 (32923187-32922900)
               

               
               1-295, gnl|Hg17|chr17 (34811438-34811136)
               

               
               1-295, gnl|Mm7|chr11 (98258654-98258351)
               


               
               408-707, gnl|bosTau2|chr19 (34697429-34697729)
               

               
               408-707, gnl|Hg17|chr17 (34710855-34710558)

	1-295, gnl\|bosTau2\|chr19 (32923187-32922900)
	1-295, gnl\|Hg17\|chr17 (34811438-34811136)
	1-295, gnl\|Mm7\|chr11 (98258654-98258351)

	408-707, gnl\|bosTau2\|chr19 (34697429-34697729)
	408-707, gnl\|Hg17\|chr17 (34710855-34710558)