Non-Coding RNA Search

Ss1.1-Thy1-THY010206H10.5

Sequence:


               
               ATCAGAAGGCTTGTCCTCATCCCAGGCAGACAGCAAGCCAGCCCTCCCCCCAGACCCAGA
GCTTCCCCAGGCCACCTTCTCCAGGAGCCTCAGACACTGCTCTCCACTGTGAGTACTGCC
CTCCCTTCTCCTCCCCATTCCAGCGTCACCTGTGTCCTCAGTTGTGTGCTTCCATGATGG
CTCCTAAAACCCAGGATTTCACTCCCTTGCTCAGTGGCCATGAGTACTAGGTGCTTGGCT
TGAGGCTACCAGGGAAGCAGAGGTGACCCAGGTGGCACCCTCCCGGCTTCTAGGGTGAGT
AATAAGACTAACTCCCACCCACACAGCTGAGGCTCGGGCTCAAGTCAGTCTGTTCTGTGA
TTTGTACCTTAAAGGAAGGAGAAGCAGGAGTTGGAGACAGGTGACAATAAGGTGGCCAGG
GCCTGAGAGAGTAAAGCTGCCATGAGGTCCCTGAGTTTGAGAGACTGTCCCAAGGAAAGC
ATGTTTGGGGCAGCATTCTCTGTAGCAGTGAAAAATTGGAAACAAGCAAATTCTGCACCA
GGAGGCAACTGGTTAAATGAATCGTAAAGAATCCAGAGAGTGGAAAAGTTGGCAGCCTCA
CACTGAACTGGCATTAAAAGAGGTTCATGAAACACTGCTACCTAGAGAGCAAGACAGAAA
ATGGTTTGTGTAGTCTCATTTTCTTACCTTTAAGAATGTGTGTATGTGTGTTTGACACTG
TGGTGCCAAGAAAATGTCTAAAAGGCTGTGCCTCAGAAAACTCACAATGGCTCTCCTAGG
AAAGGGATGTTTGAGGAGTTTTTATTTTTGCCACTTTATAGGTTTGCTTTGGGGTGATAT
TTTGTTATTGTTGTTCATTGTGAATATACTTCTCTATAATCAGAGAAACACAAAGCCTCT
CTATTTTAAATGACTCATCAGTGAATTCTGTTTTGTCCTGTCAGACACACTCACCCTGTT
CAGTTCTTAGTTGGCTGCTATTCCAGGGACACACCATGGGTGAGCAGCTGCTGAGTGCGG
GGCTGCGATGTGGCGTGGCCACCAGTGGGAGAGGCCCGCTCCTCCCTCCCCTCGCCCGAC
AAACAAAAGTTCATCTGCCATTTTAGCACCTGCAGTTTGACAGCCTCTTTCCTCAATATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGAAGGCTTGTCCTCATCCCAGGCAGACAGCAAGCCAGCCCTCCCCCCAGACCCAGA
GCTTCCCCAGGCCACCTTCTCCAGGAGCCTCAGACACTGCTCTCCACTGTGAGTACTGCC
CTCCCTTCTCCTCCCCATTCCAGCGTCACCTGTGTCCTCAGTTGTGTGCTTCCATGATGG
CTCCTAAAACCCAGGATTTCACTCCCTTGCTCAGTGGCCATGAGTACTAGGTGCTTGGCT
TGAGGCTACCAGGGAAGCAGAGGTGACCCAGGTGGCACCCTCCCGGCTTCTAGGGTGAGT
AATAAGACTAACTCCCACCCACACAGCTGAGGCTCGGGCTCAAGTCAGTCTGTTCTGTGA
TTTGTACCTTAAAGGAAGGAGAAGCAGGAGTTGGAGACAGGTGACAATAAGGTGGCCAGG
GCCTGAGAGAGTAAAGCTGCCATGAGGTCCCTGAGTTTGAGAGACTGTCCCAAGGAAAGC
ATGTTTGGGGCAGCATTCTCTGTAGCAGTGAAAAATTGGAAACAAGCAAATTCTGCACCA
GGAGGCAACTGGTTAAATGAATCGTAAAGAATCCAGAGAGTGGAAAAGTTGGCAGCCTCA
CACTGAACTGGCATTAAAAGAGGTTCATGAAACACTGCTACCTAGAGAGCAAGACAGAAA
ATGGTTTGTGTAGTCTCATTTTCTTACCTTTAAGAATGTGTGTATGTGTGTTTGACACTG
TGGTGCCAAGAAAATGTCTAAAAGGCTGTGCCTCAGAAAACTCACAATGGCTCTCCTAGG
AAAGGGATGTTTGAGGAGTTTTTATTTTTGCCACTTTATAGGTTTGCTTTGGGGTGATAT
TTTGTTATTGTTGTTCATTGTGAATATACTTCTCTATAATCAGAGAAACACAAAGCCTCT
CTATTTTAAATGACTCATCAGTGAATTCTGTTTTGTCCTGTCAGACACACTCACCCTGTT
CAGTTCTTAGTTGGCTGCTATTCCAGGGACACACCATGGGTGAGCAGCTGCTGAGTGCGG
GGCTGCGATGTGGCGTGGCCACCAGTGGGAGAGGCCCGCTCCTCCCTCCCCTCGCCCGAC
AAACAAAAGTTCATCTGCCATTTTAGCACCTGCAGTTTGACAGCCTCTTTCCTCAATATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-120, - strand, RNAz p=0.779272
               

               
               239-351, - strand, RNAz p=0.510848

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-120, - strand, RNAz p=0.779272
               

               
               239-351, - strand, RNAz p=0.510848

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               47-124, - strand, RNAmicro p=0.967682

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               47-124, - strand, RNAmicro p=0.967682

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-602, gnl|bosTau2|chr22 (42136117-42135531)
               

               
               3-602, gnl|Hg17|chr3 (45903047-45903622)
               

               
               3-602, gnl|Mm7|chr9 (123483336-123483834)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-602, gnl|bosTau2|chr22 (42136117-42135531)
               

               
               3-602, gnl|Hg17|chr3 (45903047-45903622)
               

               
               3-602, gnl|Mm7|chr9 (123483336-123483834)

	3-120, - strand, RNAz p=0.779272
	239-351, - strand, RNAz p=0.510848

	3-602, gnl\|bosTau2\|chr22 (42136117-42135531)
	3-602, gnl\|Hg17\|chr3 (45903047-45903622)
	3-602, gnl\|Mm7\|chr9 (123483336-123483834)