Non-Coding RNA Search

Ss1.1-Tra1-TCH01A020056.5

Sequence:


               
               AATATTTGTGCCGGCGCCCCAGGGACGGACAGGCTCCAGAGACGCGCCGGCAGCTGGCCT
CCAACTGGTGCCCCCATGGGCAGCCCCTCCTTTTTCTCGCGGCGGCTGCCGCCGCTGTGG
CTACTGCTGCTGTCGCCGTGGCCAGTCTGGACCCAGGCGCTCCCAGCAGCCACCCCCTCC
GGACCCCCGGGCGCCCCGGACTGCCCGGAGGCGTGCGTGTGCGCGCCGGGCGGCCAGGCC
AACTGCTCCGGGCGCGCGCTGCCCGCCGTGCCGGGGGGCCTGAGAATGAGCGTGCGTATT
CTGCTGCTGGACCACAACCGCGTGCGGGCGCTGCCTCCCGGCGCCTTCGTGGGCGCTGGC
GCGCTGCTACGTCTGGACCTGCACGAGAACGGCCTGCGCTGGGTGCACGCGTGGGCCTTC
TGGGGCCTGGGCGCGCTGCAGCAGCTCGACCTCAGCGCCAACCAGCTGGAGGTGCTGGTG
CCCGGCACCTTCGTGCCACTGCGGGCGCTGCGCGACCTCTCGCTGGCGGGTAACCGGCTG
GCGCGCCTGGAGCCCGCCGCGCTGGGCGCGCTCCCGCTGCTGCGCGCGCTCAACCTGCGG
GACAACGAGCTGCCGGCGCTCGCGCGGGGCCTCCTGGCCGGCCTGCCCGCCCTCGACACG
CTGCGCCTGCGCGGCAACCCCTGGGCCTGCGGCTGCGCGCTGCGCCCGCTCTGCGCCTGG
CTGCGCCGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATTTGTGCCGGCGCCCCAGGGACGGACAGGCTCCAGAGACGCGCCGGCAGCTGGCCT
CCAACTGGTGCCCCCATGGGCAGCCCCTCCTTTTTCTCGCGGCGGCTGCCGCCGCTGTGG
CTACTGCTGCTGTCGCCGTGGCCAGTCTGGACCCAGGCGCTCCCAGCAGCCACCCCCTCC
GGACCCCCGGGCGCCCCGGACTGCCCGGAGGCGTGCGTGTGCGCGCCGGGCGGCCAGGCC
AACTGCTCCGGGCGCGCGCTGCCCGCCGTGCCGGGGGGCCTGAGAATGAGCGTGCGTATT
CTGCTGCTGGACCACAACCGCGTGCGGGCGCTGCCTCCCGGCGCCTTCGTGGGCGCTGGC
GCGCTGCTACGTCTGGACCTGCACGAGAACGGCCTGCGCTGGGTGCACGCGTGGGCCTTC
TGGGGCCTGGGCGCGCTGCAGCAGCTCGACCTCAGCGCCAACCAGCTGGAGGTGCTGGTG
CCCGGCACCTTCGTGCCACTGCGGGCGCTGCGCGACCTCTCGCTGGCGGGTAACCGGCTG
GCGCGCCTGGAGCCCGCCGCGCTGGGCGCGCTCCCGCTGCTGCGCGCGCTCAACCTGCGG
GACAACGAGCTGCCGGCGCTCGCGCGGGGCCTCCTGGCCGGCCTGCCCGCCCTCGACACG
CTGCGCCTGCGCGGCAACCCCTGGGCCTGCGGCTGCGCGCTGCGCCCGCTCTGCGCCTGG
CTGCGCCGGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61830018|ref|XP_584526.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61830018|ref|XP_584526.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               401-560, - strand, RNAz p=0.921521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-560, - strand, RNAz p=0.921521

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr11 (85504264-85505000)
               

               
               1-732, gnl|Hg17|chr9 (137340340-137339576)
               

               
               1-732, gnl|Mm7|chr2 (25297235-25297956)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr11 (85504264-85505000)
               

               
               1-732, gnl|Hg17|chr9 (137340340-137339576)
               

               
               1-732, gnl|Mm7|chr2 (25297235-25297956)

	1-732, gnl\|bosTau2\|chr11 (85504264-85505000)
	1-732, gnl\|Hg17\|chr9 (137340340-137339576)
	1-732, gnl\|Mm7\|chr2 (25297235-25297956)