Ss1.1-Tra1-TCH01A050009.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCCATCCCCAGAGGACAAAGAGACCAGGCCCCTAAACGGGCTGGCCCGCATCTGCGTT TCGAGATCAGCAGTGAGGATGGGTTCATCGTGGAGGCAGAGAGCCTACAGGGGGCGTGGA GAACTCTGATTGAGAAGGTGCAAGAGGCCCGTGGGCATGCCCGGCTCATACATCTCTCCT TTAGTGGAATGAGTGGGGCAAGGCTCCTGGGCATCCACCATGATGCTGTCATCTTCCTGG CAGAGCATCTGCCTGGAGCCCAGCGCTGCCATCACTATAAGTTCCGCTACCACCAGCAGG GAGAGGGCCAAGAGGAACTACCCCTGAATCCCCATGGTGCAGCCCGCGCTGAGGTCTATC TCCGGAAGTGCACCTTTGACATGTTCAACTTCCTGGCCTCCCAACACCAGGAAACGGAGG TCTAGGGAGAAGACACTCGACTGCTCCAGAAATTATTTCTAGAGTTCACGTTACAAGAAT GAATCCCATCTGTTCCCCTTTTGCTGTGTCTTCAGTAGAAGCAGTATTCTTCTTACGCCA CCAGCGGCAGGCCCAGGCCAAAGAATGGAGGGGGAGCATCTTCTTAAAAGAATGGCTCTG ACCCTCCCTCCTTTCCTTCCTTCCCCTGCAGGAAGTGCACCTTTGACATGTTCAACTTCC TGGCCTCCCAACACCGGGTGCTCCCTGAGGGAGCCGCCTGTGATGAGGAAGAGGATGAGG TGCAGCTCAGGTCAACCAGGTATGGAGGCCAGGCCGGGGTGCTGGGGGTGGTCTGGAAGG GCCCTAAGGAGGGTGACCAGGGCAAGAGAGGTCATTCCTGGGCACCAGCCTGTGCGACCC TGCTATCCCCCACCAGACGCGCCACCAGTCTGGAGCTGCCCATGGCCATGCGCTTTCGCC ACCTCAAGAAGACATCCAAAGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCCATCCCCAGAGGACAAAGAGACCAGGCCCCTAAACGGGCTGGCCCGCATCTGCGTT TCGAGATCAGCAGTGAGGATGGGTTCATCGTGGAGGCAGAGAGCCTACAGGGGGCGTGGA GAACTCTGATTGAGAAGGTGCAAGAGGCCCGTGGGCATGCCCGGCTCATACATCTCTCCT TTAGTGGAATGAGTGGGGCAAGGCTCCTGGGCATCCACCATGATGCTGTCATCTTCCTGG CAGAGCATCTGCCTGGAGCCCAGCGCTGCCATCACTATAAGTTCCGCTACCACCAGCAGG GAGAGGGCCAAGAGGAACTACCCCTGAATCCCCATGGTGCAGCCCGCGCTGAGGTCTATC TCCGGAAGTGCACCTTTGACATGTTCAACTTCCTGGCCTCCCAACACCAGGAAACGGAGG TCTAGGGAGAAGACACTCGACTGCTCCAGAAATTATTTCTAGAGTTCACGTTACAAGAAT GAATCCCATCTGTTCCCCTTTTGCTGTGTCTTCAGTAGAAGCAGTATTCTTCTTACGCCA CCAGCGGCAGGCCCAGGCCAAAGAATGGAGGGGGAGCATCTTCTTAAAAGAATGGCTCTG ACCCTCCCTCCTTTCCTTCCTTCCCCTGCAGGAAGTGCACCTTTGACATGTTCAACTTCC TGGCCTCCCAACACCGGGTGCTCCCTGAGGGAGCCGCCTGTGATGAGGAAGAGGATGAGG TGCAGCTCAGGTCAACCAGGTATGGAGGCCAGGCCGGGGTGCTGGGGGTGGTCTGGAAGG GCCCTAAGGAGGGTGACCAGGGCAAGAGAGGTCATTCCTGGGCACCAGCCTGTGCGACCC TGCTATCCCCCACCAGACGCGCCACCAGTCTGGAGCTGCCCATGGCCATGCGCTTTCGCC ACCTCAAGAAGACATCCAAAGAGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 225-344, + strand, RNAz p=0.559274 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 225-344, + strand, RNAz p=0.559274 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr18 (36884933-36885056) | |
| 1-122, gnl|Hg17|chr19 (40919457-40919580) | |
| 1-122, gnl|Mm7|chr7 (27512035-27511912) | |
| 186-365, gnl|bosTau2|chr18 (36885304-36885483) | |
| 186-365, gnl|canFam2|chr1 (119804877-119804672) | |
| 186-365, gnl|danRer3|chr16 (16255307-16255506) | |
| 186-365, gnl|dasNov1|scaffold_75974 (4614-4409) | |
| 186-365, gnl|echTel1|scaffold_320983 (81405-81586) | |
| 186-365, gnl|fr1|chrUn (124431820-124432009) | |
| 186-365, gnl|galGal2|chr24 (4228699-4228517) | |
| 186-365, gnl|hg17|chr19 (40919808-40920010) | |
| 186-365, gnl|Hg17|chr19 (40919826-40920005) | |
| 186-365, gnl|loxAfr1|scaffold_91506 (7687-7898) | |
| 186-365, gnl|mm7|chr7 (27511713-27511510) | |
| 186-365, gnl|Mm7|chr7 (27511692-27511513) | |
| 186-365, gnl|monDom2|scaffold_139 (1884217-1884416) | |
| 186-365, gnl|oryCun1|scaffold_192336 (24023-24220) | |
| 186-365, gnl|panTro1|chr20 (37751855-37752057) | |
| 186-365, gnl|rheMac2|chr19 (42218993-42219195) | |
| 186-365, gnl|rn3|chr1 (85693592-85693389) | |
| 186-365, gnl|tetNig1|chr8 (5992958-5993137) | |
| 186-365, gnl|xenTro1|scaffold_896 (376318-376121) | |
| 410-924, gnl|bosTau2|chr18 (36885564-36886076) | |
| 410-924, gnl|Mm7|chr7 (27511466-27510997) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr18 (36884933-36885056) | |
| 1-122, gnl|Hg17|chr19 (40919457-40919580) | |
| 1-122, gnl|Mm7|chr7 (27512035-27511912) | |
| 186-365, gnl|bosTau2|chr18 (36885304-36885483) | |
| 186-365, gnl|canFam2|chr1 (119804877-119804672) | |
| 186-365, gnl|danRer3|chr16 (16255307-16255506) | |
| 186-365, gnl|dasNov1|scaffold_75974 (4614-4409) | |
| 186-365, gnl|echTel1|scaffold_320983 (81405-81586) | |
| 186-365, gnl|fr1|chrUn (124431820-124432009) | |
| 186-365, gnl|galGal2|chr24 (4228699-4228517) | |
| 186-365, gnl|hg17|chr19 (40919808-40920010) | |
| 186-365, gnl|Hg17|chr19 (40919826-40920005) | |
| 186-365, gnl|loxAfr1|scaffold_91506 (7687-7898) | |
| 186-365, gnl|mm7|chr7 (27511713-27511510) | |
| 186-365, gnl|Mm7|chr7 (27511692-27511513) | |
| 186-365, gnl|monDom2|scaffold_139 (1884217-1884416) | |
| 186-365, gnl|oryCun1|scaffold_192336 (24023-24220) | |
| 186-365, gnl|panTro1|chr20 (37751855-37752057) | |
| 186-365, gnl|rheMac2|chr19 (42218993-42219195) | |
| 186-365, gnl|rn3|chr1 (85693592-85693389) | |
| 186-365, gnl|tetNig1|chr8 (5992958-5993137) | |
| 186-365, gnl|xenTro1|scaffold_896 (376318-376121) | |
| 410-924, gnl|bosTau2|chr18 (36885564-36886076) | |
| 410-924, gnl|Mm7|chr7 (27511466-27510997) |