Non-Coding RNA Search

Ss1.1-Tra1-TCH01A060012.5

Sequence:


               
               TTTCTGGCTCTAAACCTTCATATATGGTTTGACCTTTAGCTGAATCAAGTAGTAAAGATC
AAGATGAATTATGCTTGAGTGGAAAGGGATTTTAATGTTGCTCTGAACTGTGTTTTTCCT
CATCCCACATGCTGTTTAATATTATTAATTCAGCTTGAATGATGGTGAGACAAAAAAAAT
GACCCTAGTTGTTTTTGGCTAATGCATTCTTGGATATTACAAAAGTGCCTGTAACACCTG
AATGGTTAATTATAAATAGCAATGCATTTTTATTTTGTCTGCAAGAAAAAATGCAGTATG
ATTGCCTCTAAGCAGTAGAGGACAGATTTCTAGATAAATGTTCTTTCCTAGGAACGTATA
TATGACTTCCATTAGTGCTAGTAGGGCTTGTGTATTTGCATCCAGGAATTCAGTATTTAG
GATATGACGAGCAGTGAATATTTGAGGAGTTATTACTGAACTTTTCAAATAAATTGAAAG
GCATAAGTGACATTGAGTCCTGGGGAAGTGTGGTAATCCCTTAAGAATGAATTCTTCAGA
ATATTTAACTCTATTATCAATGAAATGTGAGGAGAAGGGAACTCTGCACATGTTTAGATT
CATTTCAACCTAATAGTACATACATACATTTTGCAGTCTTATCAGCTCCCTAGTAATGCA
CTTCACTATATGAAGTCAGTGGGATAGTCTCAGCCTTGTTTACAAAGCTTGGGCCCCTCA
AACTCCCCTAGTTTACTTTGTAGCCATTGTAATGGCTCTTGTAGCAGCTCTGTTGCAGAA
ACAAAAAGTGCACACAGAGAGATAGCTGTGTTTTTAATTAACCTATGAGGTAAAGATGAC
TATCATTCTAGAATTATTTTACATCATGTACACACAAAACAAAATGGATAATCTTACCTT
CTAGAACAGATGCATCTAAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTGGCTCTAAACCTTCATATATGGTTTGACCTTTAGCTGAATCAAGTAGTAAAGATC
AAGATGAATTATGCTTGAGTGGAAAGGGATTTTAATGTTGCTCTGAACTGTGTTTTTCCT
CATCCCACATGCTGTTTAATATTATTAATTCAGCTTGAATGATGGTGAGACAAAAAAAAT
GACCCTAGTTGTTTTTGGCTAATGCATTCTTGGATATTACAAAAGTGCCTGTAACACCTG
AATGGTTAATTATAAATAGCAATGCATTTTTATTTTGTCTGCAAGAAAAAATGCAGTATG
ATTGCCTCTAAGCAGTAGAGGACAGATTTCTAGATAAATGTTCTTTCCTAGGAACGTATA
TATGACTTCCATTAGTGCTAGTAGGGCTTGTGTATTTGCATCCAGGAATTCAGTATTTAG
GATATGACGAGCAGTGAATATTTGAGGAGTTATTACTGAACTTTTCAAATAAATTGAAAG
GCATAAGTGACATTGAGTCCTGGGGAAGTGTGGTAATCCCTTAAGAATGAATTCTTCAGA
ATATTTAACTCTATTATCAATGAAATGTGAGGAGAAGGGAACTCTGCACATGTTTAGATT
CATTTCAACCTAATAGTACATACATACATTTTGCAGTCTTATCAGCTCCCTAGTAATGCA
CTTCACTATATGAAGTCAGTGGGATAGTCTCAGCCTTGTTTACAAAGCTTGGGCCCCTCA
AACTCCCCTAGTTTACTTTGTAGCCATTGTAATGGCTCTTGTAGCAGCTCTGTTGCAGAA
ACAAAAAGTGCACACAGAGAGATAGCTGTGTTTTTAATTAACCTATGAGGTAAAGATGAC
TATCATTCTAGAATTATTTTACATCATGTACACACAAAACAAAATGGATAATCTTACCTT
CTAGAACAGATGCATCTAAAAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               438-557, - strand, RNAz p=0.902664

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-557, - strand, RNAz p=0.902664

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-922, gnl|bosTau2|chr16 (21030010-21029101)
               

               
               1-922, gnl|Hg17|chr1 (242698308-242697437)
               

               
               1-922, gnl|Mm7|chr1 (179305191-179304337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-922, gnl|bosTau2|chr16 (21030010-21029101)
               

               
               1-922, gnl|Hg17|chr1 (242698308-242697437)
               

               
               1-922, gnl|Mm7|chr1 (179305191-179304337)

	1-922, gnl\|bosTau2\|chr16 (21030010-21029101)
	1-922, gnl\|Hg17\|chr1 (242698308-242697437)
	1-922, gnl\|Mm7\|chr1 (179305191-179304337)