Non-Coding RNA Search

Ss1.1-Tra1-TCH01A070050.5

Sequence:


               
               GAATGGCACAAAGACTGATTAATGTGATCAATGAGGGGGATGTTGTAGCAATGTAAATGA
AAAATGATGGTGGACTGATTCAAAAAATGACCACTGAGATGGAGAGACAGATAGATTCAA
GAGATATTCAAAAGGAAGCCTGCTTGATTGAAGATGGCGGTGGGGTGAAAGTAAAGCAAA
GGAAAAGGATAATGCCCAGGTTTCCAGCTTGAGCCACTGAGTGGATGGAGACCCCATCAC
TAAAATAGGGGAACTAACATGTGAAGAAAAGTAATCAGTTTTATTGGGACATGTTGTGAT
ACATATCCGTGGGACAAGCAAGTAGAAAGAATCAGGATGTAGTTGTGTGTGTGGATTTGA
AACTCAGAGAAACTATGGGCTGAAGATAAAGATTCAGGCATCATCAGCGTATATGTCAGG
TGGTTCTTGAAGCCATGCAAACACTTAAGACATCCAGAGGATTTTGTAGAGGGAAAAAAA
GAGGGGGGGGCATAGAACTTTGTGGGGAACAATACATGTAAGGGGCAAACAGAAGAGGAG
CCCCACATGAAACAGGGAAGGAAGACTAGAAGGTAGAAGGTAAATTTTTGGAAGCCAGAG
GAAGAGTGTGTTTCAAGAAGAAGAGAATGGTTGACTATGCTGGATTTTACTGAGATATAA
CTGAGAAATGTTTTTTTTGGATTTTTTTCACTAAGCGACCTTAGTGAAAACAGTTATCAG
TGGAAGTCATAAAAATTAGAAGTCACATCATGATAAAGTCAAAGGAAGAAGAGAAAGTAA
AGACAATAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGGCACAAAGACTGATTAATGTGATCAATGAGGGGGATGTTGTAGCAATGTAAATGA
AAAATGATGGTGGACTGATTCAAAAAATGACCACTGAGATGGAGAGACAGATAGATTCAA
GAGATATTCAAAAGGAAGCCTGCTTGATTGAAGATGGCGGTGGGGTGAAAGTAAAGCAAA
GGAAAAGGATAATGCCCAGGTTTCCAGCTTGAGCCACTGAGTGGATGGAGACCCCATCAC
TAAAATAGGGGAACTAACATGTGAAGAAAAGTAATCAGTTTTATTGGGACATGTTGTGAT
ACATATCCGTGGGACAAGCAAGTAGAAAGAATCAGGATGTAGTTGTGTGTGTGGATTTGA
AACTCAGAGAAACTATGGGCTGAAGATAAAGATTCAGGCATCATCAGCGTATATGTCAGG
TGGTTCTTGAAGCCATGCAAACACTTAAGACATCCAGAGGATTTTGTAGAGGGAAAAAAA
GAGGGGGGGGCATAGAACTTTGTGGGGAACAATACATGTAAGGGGCAAACAGAAGAGGAG
CCCCACATGAAACAGGGAAGGAAGACTAGAAGGTAGAAGGTAAATTTTTGGAAGCCAGAG
GAAGAGTGTGTTTCAAGAAGAAGAGAATGGTTGACTATGCTGGATTTTACTGAGATATAA
CTGAGAAATGTTTTTTTTGGATTTTTTTCACTAAGCGACCTTAGTGAAAACAGTTATCAG
TGGAAGTCATAAAAATTAGAAGTCACATCATGATAAAGTCAAAGGAAGAAGAGAAAGTAA
AGACAATAGTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               229-347, - strand, RNAz p=0.778359

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-347, - strand, RNAz p=0.778359

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-779, gnl|bosTau2|chr10 (19358194-19357417)
               

               
               1-779, gnl|Hg17|chr15 (33155633-33154849)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-779, gnl|bosTau2|chr10 (19358194-19357417)
               

               
               1-779, gnl|Hg17|chr15 (33155633-33154849)

	1-779, gnl\|bosTau2\|chr10 (19358194-19357417)
	1-779, gnl\|Hg17\|chr15 (33155633-33154849)