Ss1.1-Tra1-TCH01B020025.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCACGAGGGTCGGCATAGGCGAGAGCAGCATGGATTGGGGCACCGAACTGTGGGATCAG TTTGAGGTGCTTGAGCGGCACACGCAATGGGGTCTGGACCTGTTGGACAGATATGTGAAG TTCGTGAAAGAGCGGACGGAGGTGGAGCAGGCTTATGCAAAGCAGCTGCGGAGCCTGGTG AAAAAATATCTGCCCAAGAGACCTGCCAAAGATGACCCTGAATCCAAGTTCAGCCAGCAG CAGTCCTTTGTGCAGCTTCTCCAGGAGGTGAATGATTTTGCAGGCCAGCGGGAGCTGGTG GCTGAGAACCTCAGTGTCCAAGTATGTCTCGAGCTGGCCAAGTATTCGCAGGAGATGAAG CAGGAGAGAAAGATGCACTTCCAAGAAGGCCGCCGGGCTCAGCAGCAGCTGGAAAGTGGC TTCAAGCAGCTGGAGAATAGTAAGCGTAAATTTGAGCGGGACTGCCGGGAGGCAGAGAAG GCAGCCCAGACAGCTGAGCGGCTGGACCAAGATATCAACGCCACCAAGGCTGATGTGGAA AAGGCCAAGCAACAAGCCCACCTTCGGAGTCACATGGCAGAAGAAAGCAAAAATGAGTAT GCGGCCCAACTCCAGCGCTTCAACCGAGACCAGGCTCACTTCTATTTTTCCCAGATGCCC CAGATATTCGATAAGCTTCAAGACATGGATGAACGCCGGGCCACCCACCTGGGGGCTGGG TACGGGCTCCTGTCGGAGGCTGAGCTGCAGGTGGTACCCATCATCGCCAAGTGTTTGGAG GGCATGAAGGTGGCCGCCGAAGCTGTGGATGCCAAGAAAGACTCCCAGGTCCTAATTGAG TTGCACAAGTCAGGCTTTGCCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCACGAGGGTCGGCATAGGCGAGAGCAGCATGGATTGGGGCACCGAACTGTGGGATCAG TTTGAGGTGCTTGAGCGGCACACGCAATGGGGTCTGGACCTGTTGGACAGATATGTGAAG TTCGTGAAAGAGCGGACGGAGGTGGAGCAGGCTTATGCAAAGCAGCTGCGGAGCCTGGTG AAAAAATATCTGCCCAAGAGACCTGCCAAAGATGACCCTGAATCCAAGTTCAGCCAGCAG CAGTCCTTTGTGCAGCTTCTCCAGGAGGTGAATGATTTTGCAGGCCAGCGGGAGCTGGTG GCTGAGAACCTCAGTGTCCAAGTATGTCTCGAGCTGGCCAAGTATTCGCAGGAGATGAAG CAGGAGAGAAAGATGCACTTCCAAGAAGGCCGCCGGGCTCAGCAGCAGCTGGAAAGTGGC TTCAAGCAGCTGGAGAATAGTAAGCGTAAATTTGAGCGGGACTGCCGGGAGGCAGAGAAG GCAGCCCAGACAGCTGAGCGGCTGGACCAAGATATCAACGCCACCAAGGCTGATGTGGAA AAGGCCAAGCAACAAGCCCACCTTCGGAGTCACATGGCAGAAGAAAGCAAAAATGAGTAT GCGGCCCAACTCCAGCGCTTCAACCGAGACCAGGCTCACTTCTATTTTTCCCAGATGCCC CAGATATTCGATAAGCTTCAAGACATGGATGAACGCCGGGCCACCCACCTGGGGGCTGGG TACGGGCTCCTGTCGGAGGCTGAGCTGCAGGTGGTACCCATCATCGCCAAGTGTTTGGAG GGCATGAAGGTGGCCGCCGAAGCTGTGGATGCCAAGAAAGACTCCCAGGTCCTAATTGAG TTGCACAAGTCAGGCTTTGCCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 258-375, + strand, RNAz p=0.578044 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 258-375, + strand, RNAz p=0.578044 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 54-171, gnl|bosTau2|chr7 (12893554-12893437) | |
| 54-171, gnl|canFam2|chr20 (56496829-56496706) | |
| 54-171, gnl|danRer3|chr8 (7863437-7863567) | |
| 54-171, gnl|dasNov1|scaffold_10771 (43301-43424) | |
| 54-171, gnl|echTel1|scaffold_318649 (12762-12632) | |
| 54-171, gnl|fr1|chrUn (183185325-183185198) | |
| 54-171, gnl|hg17|chr19 (6692013-6692142) | |
| 54-171, gnl|Hg17|chr19 (6692020-6692137) | |
| 54-171, gnl|loxAfr1|scaffold_16803 (32984-32856) | |
| 54-171, gnl|mm7|chr17 (55462460-55462583) | |
| 54-171, gnl|Mm7|chr17 (55462461-55462578) | |
| 54-171, gnl|monDom2|scaffold_85 (5258354-5258483) | |
| 54-171, gnl|oryCun1|scaffold_128610 (1155-1032) | |
| 54-171, gnl|panTro1|chr20 (7071596-7071725) | |
| 54-171, gnl|rheMac2|chr19 (6635614-6635743) | |
| 54-171, gnl|rn3|chrUn (64560753-64560876) | |
| 54-171, gnl|tetNig1|chr18 (8708044-8707907) | |
| 224-375, gnl|bosTau2|chr7 (12892420-12892269) | |
| 224-375, gnl|Hg17|chr19 (6693974-6694125) | |
| 224-375, gnl|Mm7|chr17 (55464978-55465129) | |
| 542-672, gnl|bosTau2|chr7 (12891723-12891593) | |
| 542-672, gnl|canFam2|chr20 (56495008-56494868) | |
| 542-672, gnl|danRer3|chr8 (7881077-7881218) | |
| 542-672, gnl|dasNov1|scaffold_211596 (1131-1271) | |
| 542-672, gnl|echTel1|scaffold_265717 (4064-3925) | |
| 542-672, gnl|fr1|chrUn (183183997-183183858) | |
| 542-672, gnl|hg17|chr19 (6694714-6694854) | |
| 542-672, gnl|Hg17|chr19 (6694717-6694847) | |
| 542-672, gnl|loxAfr1|scaffold_16803 (30277-30137) | |
| 542-672, gnl|mm7|chr17 (55465975-55466115) | |
| 542-672, gnl|Mm7|chr17 (55465978-55466108) | |
| 542-672, gnl|monDom2|scaffold_85 (5259751-5259889) | |
| 542-672, gnl|oryCun1|scaffold_167488 (1791-1651) | |
| 542-672, gnl|panTro1|chr20 (7074292-7074432) | |
| 542-672, gnl|rheMac2|chr19 (6638598-6638738) | |
| 542-672, gnl|rn3|chrUn (64563961-64564098) | |
| 542-672, gnl|tetNig1|chr18 (8706880-8706741) | |
| 673-818, gnl|bosTau2|chr7 (12890814-12890669) | |
| 673-818, gnl|canFam2|chr20 (56494324-56494162) | |
| 673-818, gnl|danRer3|chr8 (7882277-7882416) | |
| 673-818, gnl|dasNov1|scaffold_125704 (359-521) | |
| 673-818, gnl|echTel1|scaffold_265717 (3072-2910) | |
| 673-818, gnl|fr1|chrUn (183183746-183183584) | |
| 673-818, gnl|hg17|chr19 (6695563-6695725) | |
| 673-818, gnl|Hg17|chr19 (6695565-6695710) | |
| 673-818, gnl|loxAfr1|scaffold_16803 (29266-29104) | |
| 673-818, gnl|mm7|chr17 (55466736-55466898) | |
| 673-818, gnl|Mm7|chr17 (55466738-55466883) | |
| 673-818, gnl|monDom2|scaffold_85 (5260035-5260197) | |
| 673-818, gnl|panTro1|chr20 (7075140-7075302) | |
| 673-818, gnl|rheMac2|chr19 (6639449-6639611) | |
| 673-818, gnl|rn3|chrUn (64564692-64564854) | |
| 673-818, gnl|tetNig1|chr18 (8706643-8706482) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-171, gnl|bosTau2|chr7 (12893554-12893437) | |
| 54-171, gnl|canFam2|chr20 (56496829-56496706) | |
| 54-171, gnl|danRer3|chr8 (7863437-7863567) | |
| 54-171, gnl|dasNov1|scaffold_10771 (43301-43424) | |
| 54-171, gnl|echTel1|scaffold_318649 (12762-12632) | |
| 54-171, gnl|fr1|chrUn (183185325-183185198) | |
| 54-171, gnl|hg17|chr19 (6692013-6692142) | |
| 54-171, gnl|Hg17|chr19 (6692020-6692137) | |
| 54-171, gnl|loxAfr1|scaffold_16803 (32984-32856) | |
| 54-171, gnl|mm7|chr17 (55462460-55462583) | |
| 54-171, gnl|Mm7|chr17 (55462461-55462578) | |
| 54-171, gnl|monDom2|scaffold_85 (5258354-5258483) | |
| 54-171, gnl|oryCun1|scaffold_128610 (1155-1032) | |
| 54-171, gnl|panTro1|chr20 (7071596-7071725) | |
| 54-171, gnl|rheMac2|chr19 (6635614-6635743) | |
| 54-171, gnl|rn3|chrUn (64560753-64560876) | |
| 54-171, gnl|tetNig1|chr18 (8708044-8707907) | |
| 224-375, gnl|bosTau2|chr7 (12892420-12892269) | |
| 224-375, gnl|Hg17|chr19 (6693974-6694125) | |
| 224-375, gnl|Mm7|chr17 (55464978-55465129) | |
| 542-672, gnl|bosTau2|chr7 (12891723-12891593) | |
| 542-672, gnl|canFam2|chr20 (56495008-56494868) | |
| 542-672, gnl|danRer3|chr8 (7881077-7881218) | |
| 542-672, gnl|dasNov1|scaffold_211596 (1131-1271) | |
| 542-672, gnl|echTel1|scaffold_265717 (4064-3925) | |
| 542-672, gnl|fr1|chrUn (183183997-183183858) | |
| 542-672, gnl|hg17|chr19 (6694714-6694854) | |
| 542-672, gnl|Hg17|chr19 (6694717-6694847) | |
| 542-672, gnl|loxAfr1|scaffold_16803 (30277-30137) | |
| 542-672, gnl|mm7|chr17 (55465975-55466115) | |
| 542-672, gnl|Mm7|chr17 (55465978-55466108) | |
| 542-672, gnl|monDom2|scaffold_85 (5259751-5259889) | |
| 542-672, gnl|oryCun1|scaffold_167488 (1791-1651) | |
| 542-672, gnl|panTro1|chr20 (7074292-7074432) | |
| 542-672, gnl|rheMac2|chr19 (6638598-6638738) | |
| 542-672, gnl|rn3|chrUn (64563961-64564098) | |
| 542-672, gnl|tetNig1|chr18 (8706880-8706741) | |
| 673-818, gnl|bosTau2|chr7 (12890814-12890669) | |
| 673-818, gnl|canFam2|chr20 (56494324-56494162) | |
| 673-818, gnl|danRer3|chr8 (7882277-7882416) | |
| 673-818, gnl|dasNov1|scaffold_125704 (359-521) | |
| 673-818, gnl|echTel1|scaffold_265717 (3072-2910) | |
| 673-818, gnl|fr1|chrUn (183183746-183183584) | |
| 673-818, gnl|hg17|chr19 (6695563-6695725) | |
| 673-818, gnl|Hg17|chr19 (6695565-6695710) | |
| 673-818, gnl|loxAfr1|scaffold_16803 (29266-29104) | |
| 673-818, gnl|mm7|chr17 (55466736-55466898) | |
| 673-818, gnl|Mm7|chr17 (55466738-55466883) | |
| 673-818, gnl|monDom2|scaffold_85 (5260035-5260197) | |
| 673-818, gnl|panTro1|chr20 (7075140-7075302) | |
| 673-818, gnl|rheMac2|chr19 (6639449-6639611) | |
| 673-818, gnl|rn3|chrUn (64564692-64564854) | |
| 673-818, gnl|tetNig1|chr18 (8706643-8706482) |