Ss1.1-Tra1-TCH01B020067.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCATGTTCTCCCTGATGTGCTCCAACTGCCCAACTTTGGCTGTTCAGCTTATGAAGCA AAACATTGCGGAAACCCTTCACTTTCTCCTGTGTGGTGCCTCCAATGGAAGTTGTCAGGA GCAGATTGATCTCGTTCCACGAAGTCCTCAAGAGCTATATGAACTGACATCTCTGATTTG TGAACTTATGCCATGTTTACCAAAAGAAGGCATTTTTGCAGTTGATACCATGCTGAAGAA GGGAAACGCACAGAACACAGACGGTGCGATATGGCAGTGGCGTGATGACCGGGGCCTTTG GCATCCCTATAACCGGATTGACAGCCGGATCATTGAGGCAGCCCATCAGGTCGGTGAGGA TGAGATAAGCTTGTCCACTCTGGGACGAGTTTATACTATTGATTTTAATTCTATGCAGCA AATCAATGAGGACACGGGAACAGCACGTGCCATTCAGAGAAAACCTAACCCCTTAGCCAA TACTAACACTAGTGGATATTCAGAGTTAAAGAAGGATGATGCTCGAGCACAGCTCATGAA AGAGGATCCGGAACTGGCTAAGTCTTTTATTAAGACATTATTTGGTGTTCTTTATGAAGT GTATAGTTCCTCAGCAGGACCTGCAGTCAGACATAAGTGCCTTAGAGCAATTCTTAGGAT AATTTATTTCGCGGATGCCGAACTTCTAAAGGATGTCCTGAAAAATCATGCTGTTTCAAG TCACATTGCTTCCATGCTATCGAGCCAAGACCTGAAGATTGTCGTTGGAGCTCTTCAGAT GGCAGAGATATTAATGCAGAAGTTACCTGATATTTTTAGTGTTTACTTCAGAAGGGAAGG TGTAATGCATCAAGTGAAACACTTAGCAGAATCGGAATCATTGTTGACAAGTCCACCAAA GGCGTGTACGAATGGGTCGGGATCCTTGGGGTCCACGACGTCGGTCAGCAGTGGAACAGC CACGGCTGCCACTAACGCCACAGCTGACCTGGGGTCCCCCAGCTTGCAGCACAGCAGAGA CGATTCTTTAGATCTGAGCCCTCAAGGTCGATTAAGTGATGTTCTAAAAAGAAAACGACT GCCAAAACGAGGATCGAGAAGGCCAAAGTATTCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCATGTTCTCCCTGATGTGCTCCAACTGCCCAACTTTGGCTGTTCAGCTTATGAAGCA AAACATTGCGGAAACCCTTCACTTTCTCCTGTGTGGTGCCTCCAATGGAAGTTGTCAGGA GCAGATTGATCTCGTTCCACGAAGTCCTCAAGAGCTATATGAACTGACATCTCTGATTTG TGAACTTATGCCATGTTTACCAAAAGAAGGCATTTTTGCAGTTGATACCATGCTGAAGAA GGGAAACGCACAGAACACAGACGGTGCGATATGGCAGTGGCGTGATGACCGGGGCCTTTG GCATCCCTATAACCGGATTGACAGCCGGATCATTGAGGCAGCCCATCAGGTCGGTGAGGA TGAGATAAGCTTGTCCACTCTGGGACGAGTTTATACTATTGATTTTAATTCTATGCAGCA AATCAATGAGGACACGGGAACAGCACGTGCCATTCAGAGAAAACCTAACCCCTTAGCCAA TACTAACACTAGTGGATATTCAGAGTTAAAGAAGGATGATGCTCGAGCACAGCTCATGAA AGAGGATCCGGAACTGGCTAAGTCTTTTATTAAGACATTATTTGGTGTTCTTTATGAAGT GTATAGTTCCTCAGCAGGACCTGCAGTCAGACATAAGTGCCTTAGAGCAATTCTTAGGAT AATTTATTTCGCGGATGCCGAACTTCTAAAGGATGTCCTGAAAAATCATGCTGTTTCAAG TCACATTGCTTCCATGCTATCGAGCCAAGACCTGAAGATTGTCGTTGGAGCTCTTCAGAT GGCAGAGATATTAATGCAGAAGTTACCTGATATTTTTAGTGTTTACTTCAGAAGGGAAGG TGTAATGCATCAAGTGAAACACTTAGCAGAATCGGAATCATTGTTGACAAGTCCACCAAA GGCGTGTACGAATGGGTCGGGATCCTTGGGGTCCACGACGTCGGTCAGCAGTGGAACAGC CACGGCTGCCACTAACGCCACAGCTGACCTGGGGTCCCCCAGCTTGCAGCACAGCAGAGA CGATTCTTTAGATCTGAGCCCTCAAGGTCGATTAAGTGATGTTCTAAAAAGAAAACGACT GCCAAAACGAGGATCGAGAAGGCCAAAGTATTCACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 877-995, + strand, RNAz p=0.508944 | |
| 917-1036, - strand, RNAz p=0.771832 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 877-995, + strand, RNAz p=0.508944 | |
| 917-1036, - strand, RNAz p=0.771832 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 180-341, gnl|bosTau2|chr2 (69985291-69985130) | |
| 180-341, gnl|Hg17|chr2 (230498086-230497925) | |
| 180-341, gnl|Mm7|chr1 (84974457-84974296) | |
| 492-720, gnl|bosTau2|chr2 (69981176-69980948) | |
| 492-720, gnl|canFam2|chr25 (45095367-45095618) | |
| 492-720, gnl|danRer3|chr18 (44199604-44199355) | |
| 492-720, gnl|dasNov1|scaffold_4569 (35485-35736) | |
| 492-720, gnl|echTel1|scaffold_299039 (4981-4730) | |
| 492-720, gnl|fr1|chrUn (244958599-244958389) | |
| 492-720, gnl|galGal2|chr9 (3588322-3588071) | |
| 492-720, gnl|hg17|chr2 (230494204-230494455) | |
| 492-720, gnl|Hg17|chr2 (230494448-230494220) | |
| 492-720, gnl|loxAfr1|scaffold_247 (41822-42073) | |
| 492-720, gnl|mm7|chr1 (84971243-84971494) | |
| 492-720, gnl|Mm7|chr1 (84971487-84971259) | |
| 492-720, gnl|monDom2|scaffold_28 (11531030-11531274) | |
| 492-720, gnl|oryCun1|scaffold_179470 (97276-97527) | |
| 492-720, gnl|panTro1|chr13 (121127812-121128063) | |
| 492-720, gnl|rheMac2|chr12 (93676149-93676400) | |
| 492-720, gnl|rn3|chr9 (84180542-84180793) | |
| 492-720, gnl|tetNig1|chrUn_random (46004298-46004060) | |
| 492-720, gnl|xenTro1|scaffold_108 (414324-414092) | |
| 837-1047, gnl|bosTau2|chr2 (69977972-69977762) | |
| 837-1047, gnl|canFam2|chr25 (45092205-45092371) | |
| 837-1047, gnl|danRer3|chr18 (44201833-44201670) | |
| 837-1047, gnl|echTel1|scaffold_299039 (8172-8012) | |
| 837-1047, gnl|fr1|chrUn (244959205-244959042) | |
| 837-1047, gnl|galGal2|chr9 (3589911-3589745) | |
| 837-1047, gnl|hg17|chr2 (230492467-230492633) | |
| 837-1047, gnl|Hg17|chr2 (230492683-230492473) | |
| 837-1047, gnl|loxAfr1|scaffold_247 (38599-38765) | |
| 837-1047, gnl|mm7|chr1 (84967803-84967968) | |
| 837-1047, gnl|Mm7|chr1 (84968018-84967808) | |
| 837-1047, gnl|monDom2|scaffold_28 (11528335-11528498) | |
| 837-1047, gnl|oryCun1|scaffold_179470 (95352-95518) | |
| 837-1047, gnl|panTro1|chr13 (121126079-121126245) | |
| 837-1047, gnl|rheMac2|chr12 (93674544-93674710) | |
| 837-1047, gnl|rn3|chr9 (84176907-84177072) | |
| 837-1047, gnl|tetNig1|chrUn_random (46004895-46004732) | |
| 837-1047, gnl|xenTro1|scaffold_108 (417081-416919) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 180-341, gnl|bosTau2|chr2 (69985291-69985130) | |
| 180-341, gnl|Hg17|chr2 (230498086-230497925) | |
| 180-341, gnl|Mm7|chr1 (84974457-84974296) | |
| 492-720, gnl|bosTau2|chr2 (69981176-69980948) | |
| 492-720, gnl|canFam2|chr25 (45095367-45095618) | |
| 492-720, gnl|danRer3|chr18 (44199604-44199355) | |
| 492-720, gnl|dasNov1|scaffold_4569 (35485-35736) | |
| 492-720, gnl|echTel1|scaffold_299039 (4981-4730) | |
| 492-720, gnl|fr1|chrUn (244958599-244958389) | |
| 492-720, gnl|galGal2|chr9 (3588322-3588071) | |
| 492-720, gnl|hg17|chr2 (230494204-230494455) | |
| 492-720, gnl|Hg17|chr2 (230494448-230494220) | |
| 492-720, gnl|loxAfr1|scaffold_247 (41822-42073) | |
| 492-720, gnl|mm7|chr1 (84971243-84971494) | |
| 492-720, gnl|Mm7|chr1 (84971487-84971259) | |
| 492-720, gnl|monDom2|scaffold_28 (11531030-11531274) | |
| 492-720, gnl|oryCun1|scaffold_179470 (97276-97527) | |
| 492-720, gnl|panTro1|chr13 (121127812-121128063) | |
| 492-720, gnl|rheMac2|chr12 (93676149-93676400) | |
| 492-720, gnl|rn3|chr9 (84180542-84180793) | |
| 492-720, gnl|tetNig1|chrUn_random (46004298-46004060) | |
| 492-720, gnl|xenTro1|scaffold_108 (414324-414092) | |
| 837-1047, gnl|bosTau2|chr2 (69977972-69977762) | |
| 837-1047, gnl|canFam2|chr25 (45092205-45092371) | |
| 837-1047, gnl|danRer3|chr18 (44201833-44201670) | |
| 837-1047, gnl|echTel1|scaffold_299039 (8172-8012) | |
| 837-1047, gnl|fr1|chrUn (244959205-244959042) | |
| 837-1047, gnl|galGal2|chr9 (3589911-3589745) | |
| 837-1047, gnl|hg17|chr2 (230492467-230492633) | |
| 837-1047, gnl|Hg17|chr2 (230492683-230492473) | |
| 837-1047, gnl|loxAfr1|scaffold_247 (38599-38765) | |
| 837-1047, gnl|mm7|chr1 (84967803-84967968) | |
| 837-1047, gnl|Mm7|chr1 (84968018-84967808) | |
| 837-1047, gnl|monDom2|scaffold_28 (11528335-11528498) | |
| 837-1047, gnl|oryCun1|scaffold_179470 (95352-95518) | |
| 837-1047, gnl|panTro1|chr13 (121126079-121126245) | |
| 837-1047, gnl|rheMac2|chr12 (93674544-93674710) | |
| 837-1047, gnl|rn3|chr9 (84176907-84177072) | |
| 837-1047, gnl|tetNig1|chrUn_random (46004895-46004732) | |
| 837-1047, gnl|xenTro1|scaffold_108 (417081-416919) |