Non-Coding RNA Search

Ss1.1-Tra1-TCH01B040004.5

Sequence:


               
               TTTTTTAATGCACCTGTCAGCTATACTCCCACAACTCCCCCAACAAAGATGCAGCTCCAA
CATTTGACAAGGTGGGAAGATGATCAGACTATATTCTCCCTGGCTGTTTTCTTTTTTTGT
CCCTTTAAAATCATCAGCCTTTAAGGTGCAAATTAGTGGCTGGAGATGGTGTCTTTACCA
CTTGGTCTAGCAGCATAGCATTACTGAACCATGGTGCACAGGACCCAGTTAAATGGTGTG
CCACCTGCCTGATGACATAGGAAACATGCAGGAGGAACTTGGAGCGAGCTGGAGACGTGG
GAAAGAGCTTTCCACCTTCAGGAGACTTAGTATATTGTCAGGATTTTGGAGGAGGCCAGA
TGGGGGATAATTTAAAGTCAGGTCGCCAATGCTGAGCTAAGAGATCAGTATCCAATGCCA
GAGGGAGATCTAGATTGCCCCAATTTCCAGGTATTCTTCAGAACTTTTTATCTACAACCC
ATCCCCAGGCCTCTGCAGATCAATTCATAGCATGGCATTTTATGAGACAACTTGTTTTTA
AAATTAAGTTTCTGGCACCCGAGCCATATAATTGGCAGATATGGCCTCTAGGTGTTCCCC
TTCCCTCCTGGCACCCCCAAACAGGAGTGGGTACCGTTATTGGGCCTGGAGCCCCCCCCC
CTGTATCTCCAGAACAACTGCCACTGGGGTATGCTGGCAAGCTCCCCAGTTCCTGCTCAT
CACATCTGGCCATGCCTCCCACCTCAGCCCCCACCCCGCAAAGCCCCTGACTTGACCCTG
GTGGTAGGCAGTGGCAGATCAGGACCCAGCCCTTCTCCTCATCCCACCCTCATCCCGAGG
GGAGAGGGGGCTCCATGGGTGGGGAGGCAGGCTTTCCTCCATTCGGGCACGGCGGGTGGG
GGTGGGGCCGTTCTGCAGGAACACTGAGCTCTAGACACTTATCGCCTGCTGCCTGCCTCA
CACCCTTTGCATTGCTGTTTCCTCTGTTTTTTGGGGGTGAGGGGACCATTAGATTACACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTAATGCACCTGTCAGCTATACTCCCACAACTCCCCCAACAAAGATGCAGCTCCAA
CATTTGACAAGGTGGGAAGATGATCAGACTATATTCTCCCTGGCTGTTTTCTTTTTTTGT
CCCTTTAAAATCATCAGCCTTTAAGGTGCAAATTAGTGGCTGGAGATGGTGTCTTTACCA
CTTGGTCTAGCAGCATAGCATTACTGAACCATGGTGCACAGGACCCAGTTAAATGGTGTG
CCACCTGCCTGATGACATAGGAAACATGCAGGAGGAACTTGGAGCGAGCTGGAGACGTGG
GAAAGAGCTTTCCACCTTCAGGAGACTTAGTATATTGTCAGGATTTTGGAGGAGGCCAGA
TGGGGGATAATTTAAAGTCAGGTCGCCAATGCTGAGCTAAGAGATCAGTATCCAATGCCA
GAGGGAGATCTAGATTGCCCCAATTTCCAGGTATTCTTCAGAACTTTTTATCTACAACCC
ATCCCCAGGCCTCTGCAGATCAATTCATAGCATGGCATTTTATGAGACAACTTGTTTTTA
AAATTAAGTTTCTGGCACCCGAGCCATATAATTGGCAGATATGGCCTCTAGGTGTTCCCC
TTCCCTCCTGGCACCCCCAAACAGGAGTGGGTACCGTTATTGGGCCTGGAGCCCCCCCCC
CTGTATCTCCAGAACAACTGCCACTGGGGTATGCTGGCAAGCTCCCCAGTTCCTGCTCAT
CACATCTGGCCATGCCTCCCACCTCAGCCCCCACCCCGCAAAGCCCCTGACTTGACCCTG
GTGGTAGGCAGTGGCAGATCAGGACCCAGCCCTTCTCCTCATCCCACCCTCATCCCGAGG
GGAGAGGGGGCTCCATGGGTGGGGAGGCAGGCTTTCCTCCATTCGGGCACGGCGGGTGGG
GGTGGGGCCGTTCTGCAGGAACACTGAGCTCTAGACACTTATCGCCTGCTGCCTGCCTCA
CACCCTTTGCATTGCTGTTTCCTCTGTTTTTTGGGGGTGAGGGGACCATTAGATTACACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               655-761, - strand, RNAz p=0.835404
               

               
               802-913, - strand, RNAz p=0.878049

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               655-761, - strand, RNAz p=0.835404
               

               
               802-913, - strand, RNAz p=0.878049

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               84-1020, gnl|bosTau2|chr7 (15503285-15504225)
               

               
               84-1020, gnl|Hg17|chr19 (5204136-5202585)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-1020, gnl|bosTau2|chr7 (15503285-15504225)
               

               
               84-1020, gnl|Hg17|chr19 (5204136-5202585)

	655-761, - strand, RNAz p=0.835404
	802-913, - strand, RNAz p=0.878049

	84-1020, gnl\|bosTau2\|chr7 (15503285-15504225)
	84-1020, gnl\|Hg17\|chr19 (5204136-5202585)