Ss1.1-Tra1-TCH01B100094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGAGACGATGCGGCAGTTCCTGGTGGGCCTCCTCCGCAGCTTGGACGTAGGACCTAAC GCCACGCGCGTCGGAGTAATCCAGTATTCGAGTCAAGTGCAGAGCGTCTTCCCGCTCGGT GCCTTTTCGCGCCGTGAGGGTATGGAGGGCGCCATTCGCGCTTTAGTGCCACTGGCGCAG GGCACCATGACGGGTCTGGCAATCCAGTATGCCATGAACGTGGCCTTCAGCGTGGCCGAG GGCGCGCGCCCACCAGAGGCGCGCGTGCCGCGTGTCGCTGTCATCGTGACCGACGGGCGG CCCCAGGATCGCGTGGCCGAAGTGGCGGCGCAGGCGCGCGCCCGTGGCATCGAGATCTAC GCCGTGGGTGTGCAGCGCGCCGACGTCGGCTCCCTGCGCGCCATGGCATCTCCCCCGCTG GACGAGCACGTCTTCCTTGTTGAGTCCTTCGACCTCATCCAGGAGTTTGGCCAGCAGTTC CAGGGCCGCCTGTGTCGAAAGGACTTGTGTGCTGAGGGGGGACACGGCTGCCAGCACCAG TGTGTGAGCGCCCCAGGCACGTTCCACTGTGCCTGCAACCCTGGCTACCGGCTAGCAGCA GATAACAAGAGCTGTTTGGCCATCAACCTGTGTGCCGAAGAGACCCATGGCTGTGAGCAT CATTGCGTCAGCTCCCCAGGCTCCTATTTCTGTCACTGCCGAGCTGGCTTTGTACTCCAG CAGGACCAGAGGAGCTGCAGGGCCATTGACTACTGCGGCTTTGGGAACCACAGCTGCCAA CATGAGTGTGTTAACACCTTTGGTGGCCCGAGGTGCCGCTGCAGAGAGGGCCATGACTTG CTGCCTGACGGGAGGAGCTGTCAGGCCCGGGACCTTTGCAACGGTGTAGACCATGGATGC GAGTTCCAGTGTGTGAGTGAGGGCCTCTCCTACCGCTGCCTGTGCCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGAGACGATGCGGCAGTTCCTGGTGGGCCTCCTCCGCAGCTTGGACGTAGGACCTAAC GCCACGCGCGTCGGAGTAATCCAGTATTCGAGTCAAGTGCAGAGCGTCTTCCCGCTCGGT GCCTTTTCGCGCCGTGAGGGTATGGAGGGCGCCATTCGCGCTTTAGTGCCACTGGCGCAG GGCACCATGACGGGTCTGGCAATCCAGTATGCCATGAACGTGGCCTTCAGCGTGGCCGAG GGCGCGCGCCCACCAGAGGCGCGCGTGCCGCGTGTCGCTGTCATCGTGACCGACGGGCGG CCCCAGGATCGCGTGGCCGAAGTGGCGGCGCAGGCGCGCGCCCGTGGCATCGAGATCTAC GCCGTGGGTGTGCAGCGCGCCGACGTCGGCTCCCTGCGCGCCATGGCATCTCCCCCGCTG GACGAGCACGTCTTCCTTGTTGAGTCCTTCGACCTCATCCAGGAGTTTGGCCAGCAGTTC CAGGGCCGCCTGTGTCGAAAGGACTTGTGTGCTGAGGGGGGACACGGCTGCCAGCACCAG TGTGTGAGCGCCCCAGGCACGTTCCACTGTGCCTGCAACCCTGGCTACCGGCTAGCAGCA GATAACAAGAGCTGTTTGGCCATCAACCTGTGTGCCGAAGAGACCCATGGCTGTGAGCAT CATTGCGTCAGCTCCCCAGGCTCCTATTTCTGTCACTGCCGAGCTGGCTTTGTACTCCAG CAGGACCAGAGGAGCTGCAGGGCCATTGACTACTGCGGCTTTGGGAACCACAGCTGCCAA CATGAGTGTGTTAACACCTTTGGTGGCCCGAGGTGCCGCTGCAGAGAGGGCCATGACTTG CTGCCTGACGGGAGGAGCTGTCAGGCCCGGGACCTTTGCAACGGTGTAGACCATGGATGC GAGTTCCAGTGTGTGAGTGAGGGCCTCTCCTACCGCTGCCTGTGCCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 742-865, + strand, RNAz p=0.619393 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 742-865, + strand, RNAz p=0.619393 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 44-501, gnl|bosTau2|chr11 (60216103-60215646) | |
| 44-501, gnl|canFam2|chr17 (18025481-18026053) | |
| 44-501, gnl|danRer3|chr13 (33676141-33676711) | |
| 44-501, gnl|dasNov1|scaffold_23551 (3480-4052) | |
| 44-501, gnl|echTel1|scaffold_296834 (7382-6820) | |
| 44-501, gnl|fr1|chrUn (80860048-80860614) | |
| 44-501, gnl|galGal2|chr3 (99643466-99644042) | |
| 44-501, gnl|hg17|chr2 (20127119-20127699) | |
| 44-501, gnl|Hg17|chr2 (20127585-20127120) | |
| 44-501, gnl|loxAfr1|scaffold_4695 (92679-92107) | |
| 44-501, gnl|mm7|chr12 (8978813-8978233) | |
| 44-501, gnl|Mm7|chr12 (8978345-8978802) | |
| 44-501, gnl|monDom2|scaffold_1 (156457081-156456505) | |
| 44-501, gnl|oryCun1|scaffold_192539 (4104-4684) | |
| 44-501, gnl|panTro1|chr12_random (10750860-10750280) | |
| 44-501, gnl|rheMac2|chr13 (19903379-19903959) | |
| 44-501, gnl|rn3|chr6 (32447541-32446961) | |
| 44-501, gnl|tetNig1|chr14 (4077478-4076912) | |
| 44-501, gnl|xenTro1|scaffold_103 (1479785-1480356) | |
| 742-865, gnl|bosTau2|chr13 (55538983-55539106) | |
| 742-865, gnl|Hg17|chr20 (43363279-43363156) | |
| 742-865, gnl|Mm7|chr2 (164137955-164137832) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-501, gnl|bosTau2|chr11 (60216103-60215646) | |
| 44-501, gnl|canFam2|chr17 (18025481-18026053) | |
| 44-501, gnl|danRer3|chr13 (33676141-33676711) | |
| 44-501, gnl|dasNov1|scaffold_23551 (3480-4052) | |
| 44-501, gnl|echTel1|scaffold_296834 (7382-6820) | |
| 44-501, gnl|fr1|chrUn (80860048-80860614) | |
| 44-501, gnl|galGal2|chr3 (99643466-99644042) | |
| 44-501, gnl|hg17|chr2 (20127119-20127699) | |
| 44-501, gnl|Hg17|chr2 (20127585-20127120) | |
| 44-501, gnl|loxAfr1|scaffold_4695 (92679-92107) | |
| 44-501, gnl|mm7|chr12 (8978813-8978233) | |
| 44-501, gnl|Mm7|chr12 (8978345-8978802) | |
| 44-501, gnl|monDom2|scaffold_1 (156457081-156456505) | |
| 44-501, gnl|oryCun1|scaffold_192539 (4104-4684) | |
| 44-501, gnl|panTro1|chr12_random (10750860-10750280) | |
| 44-501, gnl|rheMac2|chr13 (19903379-19903959) | |
| 44-501, gnl|rn3|chr6 (32447541-32446961) | |
| 44-501, gnl|tetNig1|chr14 (4077478-4076912) | |
| 44-501, gnl|xenTro1|scaffold_103 (1479785-1480356) | |
| 742-865, gnl|bosTau2|chr13 (55538983-55539106) | |
| 742-865, gnl|Hg17|chr20 (43363279-43363156) | |
| 742-865, gnl|Mm7|chr2 (164137955-164137832) |