Ss1.1-Tra1-TCH01B110026.5
|
AGAGAATCTCAGAATGCAGACCAGAAAGATGAAACCAGCTTTTTAAAAAGAGAGCAGGAA
ACTAAGAAGGCCCTACAGTCAGGAAGAGAAGCAGTAGGCTCTGAGGCTAATATGATAAAG
CAAAATTCAGGAGCTAGTGTCTCAGAAGAAAACCTGACTGATTCCTTGGAAGATGGGGGT
GGTCCTTTAGATGAAGAATCCCTTGCAGAAGAAGGTCCTGCAACTGTTAAGCCTTCTGAG
CATGATTATAAAGATGTTAATGAAGAGTATGGGATTAGGAATCATAACAGTTCCAAAGAA
AAACTGACTGTTCTAGAAGTTAACACCATTTCTGAAAGAGCTGGTAATATAACAGTCCAA
AGTGTAAGTAATGTGCAGCTTAAAAAACTTGGTGATGTGAAAGTGGAACAGCAGAAAGCC
TTAGACCATCCAGAGGAAAAATCAGATGAATTTCCAGTCATCTCTAAAGAAGAAAGTAAG
CTTGAATTATCAGGGAGCAAAGTTGTTGAACAGCAGTCTAATCAACAGCCAGAGGCCAAG
GAGAAGGGATGTGGAGATTCTCTAGAGAAGGAAACCATTAGGGAGAGGTGGAAAAAACAT
CTGAAGGTCCCTTTGACCCAGAAGTGTGTTAGAACTTCACAAGAATACAAGAAAGAGACC
AATGAGCGGTTAATTAAAGAAACAAAGACTTGTCAGGAAAGTTCAGATGTGTTTCAACAA
GAACAAGGCATCTCTGATTTACTTGGAAAAAGTGAAACTACTGAGAATGCCAGAGTTTTA
AAATCTGAATGTGATTCTTGGAGTAGGATTTCTAGTCCTGCAGCTTTCTCCATTGTTCCT
AGGAGAGCCTCTAAAGGGAGCAGAGGGGAAGGACGTTTTCAAGGTCACTTACTGCTCTCA
GGGGAACGGATAAAACCAAAGCAAGAGAAGAAGGGTGGGAGAAGCAGTGCTGACTTCCCT
GTTTTGGATTTGGAAGAGGATGATGAGGAAGATGAGAATGAGAAAACCGATGATTCTATT
GATGAGATTGTGGATGTTGTTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAGAATCTCAGAATGCAGACCAGAAAGATGAAACCAGCTTTTTAAAAAGAGAGCAGGAA
ACTAAGAAGGCCCTACAGTCAGGAAGAGAAGCAGTAGGCTCTGAGGCTAATATGATAAAG
CAAAATTCAGGAGCTAGTGTCTCAGAAGAAAACCTGACTGATTCCTTGGAAGATGGGGGT
GGTCCTTTAGATGAAGAATCCCTTGCAGAAGAAGGTCCTGCAACTGTTAAGCCTTCTGAG
CATGATTATAAAGATGTTAATGAAGAGTATGGGATTAGGAATCATAACAGTTCCAAAGAA
AAACTGACTGTTCTAGAAGTTAACACCATTTCTGAAAGAGCTGGTAATATAACAGTCCAA
AGTGTAAGTAATGTGCAGCTTAAAAAACTTGGTGATGTGAAAGTGGAACAGCAGAAAGCC
TTAGACCATCCAGAGGAAAAATCAGATGAATTTCCAGTCATCTCTAAAGAAGAAAGTAAG
CTTGAATTATCAGGGAGCAAAGTTGTTGAACAGCAGTCTAATCAACAGCCAGAGGCCAAG
GAGAAGGGATGTGGAGATTCTCTAGAGAAGGAAACCATTAGGGAGAGGTGGAAAAAACAT
CTGAAGGTCCCTTTGACCCAGAAGTGTGTTAGAACTTCACAAGAATACAAGAAAGAGACC
AATGAGCGGTTAATTAAAGAAACAAAGACTTGTCAGGAAAGTTCAGATGTGTTTCAACAA
GAACAAGGCATCTCTGATTTACTTGGAAAAAGTGAAACTACTGAGAATGCCAGAGTTTTA
AAATCTGAATGTGATTCTTGGAGTAGGATTTCTAGTCCTGCAGCTTTCTCCATTGTTCCT
AGGAGAGCCTCTAAAGGGAGCAGAGGGGAAGGACGTTTTCAAGGTCACTTACTGCTCTCA
GGGGAACGGATAAAACCAAAGCAAGAGAAGAAGGGTGGGAGAAGCAGTGCTGACTTCCCT
GTTTTGGATTTGGAAGAGGATGATGAGGAAGATGAGAATGAGAAAACCGATGATTCTATT
GATGAGATTGTGGATGTTGTTTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-244, gnl|bosTau2|chr10 (25195552-25195312) |
|
1-244, gnl|canFam2|chr30 (11777781-11778393) |
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1-244, gnl|dasNov1|scaffold_218854 (5-614) |
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1-244, gnl|echTel1|scaffold_313701 (42454-43067) |
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1-244, gnl|galGal2|chr5 (22258147-22258837) |
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1-244, gnl|hg17|chr15 (39828692-39829301) |
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1-244, gnl|Hg17|chr15 (39829005-39829248) |
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1-244, gnl|loxAfr1|scaffold_3669 (59196-58590) |
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1-244, gnl|mm7|chr2 (119687765-119688359) |
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1-244, gnl|Mm7|chr2 (119688078-119688309) |
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1-244, gnl|monDom2|scaffold_12 (168418-167761) |
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1-244, gnl|oryCun1|scaffold_211215 (76453-77065) |
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1-244, gnl|panTro1|chr16 (39801734-39802343) |
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1-244, gnl|rheMac2|chr7 (20168563-20169172) |
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1-244, gnl|rn3|chr3 (106354409-106355003) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-244, gnl|bosTau2|chr10 (25195552-25195312) |
|
1-244, gnl|canFam2|chr30 (11777781-11778393) |
|
1-244, gnl|dasNov1|scaffold_218854 (5-614) |
|
1-244, gnl|echTel1|scaffold_313701 (42454-43067) |
|
1-244, gnl|galGal2|chr5 (22258147-22258837) |
|
1-244, gnl|hg17|chr15 (39828692-39829301) |
|
1-244, gnl|Hg17|chr15 (39829005-39829248) |
|
1-244, gnl|loxAfr1|scaffold_3669 (59196-58590) |
|
1-244, gnl|mm7|chr2 (119687765-119688359) |
|
1-244, gnl|Mm7|chr2 (119688078-119688309) |
|
1-244, gnl|monDom2|scaffold_12 (168418-167761) |
|
1-244, gnl|oryCun1|scaffold_211215 (76453-77065) |
|
1-244, gnl|panTro1|chr16 (39801734-39802343) |
|
1-244, gnl|rheMac2|chr7 (20168563-20169172) |
|
1-244, gnl|rn3|chr3 (106354409-106355003) |
