Ss1.1-Tra1-TCH01B110094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCAGGATGAGGCAGGATGAGGAGGCGGAGGTCGGCGTTCGGGTCCGTCTCTGCCCGCGG CTGTGGCGGCGCAGCCTTAGCGGTCCTTAGCGGTTCGGCGGCGGCGGCGGCTCGGTCGAC GCCTCCTCCGCCAGCTGAGCCCGCGGGAGCCCGGAACGCCGCTTCCCCGCCCATCCCCGC TCCCCGAGGCCGGCCGCCCGGCCATGGCGCAGCCGGGCCCGGCTCCCCAGCCTGACGTTT CTCTTCAGCAACGGGTAGCAGAATTGGAAAAAATTAATGCAGAATTTTTACGTGCACAGC AGCAGCTTGAGCAAGAATTTAATCAAAAGAGAGCAAAATTTAAAGAGTTATATTTGGCTA AAGAGGAGGATCTGAAGAGGCAAAATGCAGTTTTACAAGCTGCACAAGATGATTTGGGAC ATCTTCGGACACAGCTGTGGGAAGCCCAAGCAGAGATGGAAAACATCAAGGCCATTGCCA CAGTCTCTGAGAATACCAAGCAAGAAGCTATAGATGAAGTGAAAAGACAGTGGAGAGAAG AAGTTGCTTCCCTTCAGGCTGTCATGAAAGAAACAGTTCGTGACTATGAGCACCAGTTCC ACCTTAGGCTGGAGCAGGAGCGAACACAGTGGGCACAGTATCGAGAATCTGCAGAGAGGG AAATAGCTGATTTAAGGAGAAGGCTGTCTGAAGGTCAAGAGGAGGAAAATTTAGAAAATG AAATGAAAAAGGCCCAAGAGGATGCTGAAAAACTTCGGTCTGTTGTGATGCCTATGGAGA AGGAAATTGCAGCTTTGAAAGATAAACTGACAGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCAGGATGAGGCAGGATGAGGAGGCGGAGGTCGGCGTTCGGGTCCGTCTCTGCCCGCGG CTGTGGCGGCGCAGCCTTAGCGGTCCTTAGCGGTTCGGCGGCGGCGGCGGCTCGGTCGAC GCCTCCTCCGCCAGCTGAGCCCGCGGGAGCCCGGAACGCCGCTTCCCCGCCCATCCCCGC TCCCCGAGGCCGGCCGCCCGGCCATGGCGCAGCCGGGCCCGGCTCCCCAGCCTGACGTTT CTCTTCAGCAACGGGTAGCAGAATTGGAAAAAATTAATGCAGAATTTTTACGTGCACAGC AGCAGCTTGAGCAAGAATTTAATCAAAAGAGAGCAAAATTTAAAGAGTTATATTTGGCTA AAGAGGAGGATCTGAAGAGGCAAAATGCAGTTTTACAAGCTGCACAAGATGATTTGGGAC ATCTTCGGACACAGCTGTGGGAAGCCCAAGCAGAGATGGAAAACATCAAGGCCATTGCCA CAGTCTCTGAGAATACCAAGCAAGAAGCTATAGATGAAGTGAAAAGACAGTGGAGAGAAG AAGTTGCTTCCCTTCAGGCTGTCATGAAAGAAACAGTTCGTGACTATGAGCACCAGTTCC ACCTTAGGCTGGAGCAGGAGCGAACACAGTGGGCACAGTATCGAGAATCTGCAGAGAGGG AAATAGCTGATTTAAGGAGAAGGCTGTCTGAAGGTCAAGAGGAGGAAAATTTAGAAAATG AAATGAAAAAGGCCCAAGAGGATGCTGAAAAACTTCGGTCTGTTGTGATGCCTATGGAGA AGGAAATTGCAGCTTTGAAAGATAAACTGACAGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 442-587, - strand, RNAz p=0.883312 | |
| 445-587, + strand, RNAz p=0.892159 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 442-587, - strand, RNAz p=0.883312 | |
| 445-587, + strand, RNAz p=0.892159 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 13-237, gnl|bosTau2|chr19 (15053355-15053589) | |
| 13-237, gnl|Hg17|chr17 (5126305-5126539) | |
| 13-237, gnl|Mm7|chr11 (70926349-70926582) | |
| 366-587, gnl|bosTau2|chr19 (15101165-15101386) | |
| 366-587, gnl|canFam2|chr5 (34431451-34431238) | |
| 366-587, gnl|danRer3|chr5 (66139409-66139622) | |
| 366-587, gnl|dasNov1|scaffold_83210 (4678-4891) | |
| 366-587, gnl|echTel1|scaffold_323245 (66903-66690) | |
| 366-587, gnl|fr1|chrUn (181316829-181317042) | |
| 366-587, gnl|galGal2|chr19 (3215360-3215148) | |
| 366-587, gnl|hg17|chr17 (5175964-5176177) | |
| 366-587, gnl|Hg17|chr17 (5175967-5176188) | |
| 366-587, gnl|loxAfr1|scaffold_18431 (14346-14133) | |
| 366-587, gnl|mm7|chr11 (70966335-70966548) | |
| 366-587, gnl|Mm7|chr11 (70966338-70966561) | |
| 366-587, gnl|monDom2|scaffold_223 (377323-377110) | |
| 366-587, gnl|oryCun1|scaffold_215160 (44016-43803) | |
| 366-587, gnl|panTro1|chr19_random (46610120-46609907) | |
| 366-587, gnl|rheMac2|chr16 (5071630-5071843) | |
| 366-587, gnl|rn3|chr10 (57798872-57799085) | |
| 366-587, gnl|tetNig1|chrUn_random (29698388-29698601) | |
| 366-587, gnl|xenTro1|scaffold_227 (1543058-1543267) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-237, gnl|bosTau2|chr19 (15053355-15053589) | |
| 13-237, gnl|Hg17|chr17 (5126305-5126539) | |
| 13-237, gnl|Mm7|chr11 (70926349-70926582) | |
| 366-587, gnl|bosTau2|chr19 (15101165-15101386) | |
| 366-587, gnl|canFam2|chr5 (34431451-34431238) | |
| 366-587, gnl|danRer3|chr5 (66139409-66139622) | |
| 366-587, gnl|dasNov1|scaffold_83210 (4678-4891) | |
| 366-587, gnl|echTel1|scaffold_323245 (66903-66690) | |
| 366-587, gnl|fr1|chrUn (181316829-181317042) | |
| 366-587, gnl|galGal2|chr19 (3215360-3215148) | |
| 366-587, gnl|hg17|chr17 (5175964-5176177) | |
| 366-587, gnl|Hg17|chr17 (5175967-5176188) | |
| 366-587, gnl|loxAfr1|scaffold_18431 (14346-14133) | |
| 366-587, gnl|mm7|chr11 (70966335-70966548) | |
| 366-587, gnl|Mm7|chr11 (70966338-70966561) | |
| 366-587, gnl|monDom2|scaffold_223 (377323-377110) | |
| 366-587, gnl|oryCun1|scaffold_215160 (44016-43803) | |
| 366-587, gnl|panTro1|chr19_random (46610120-46609907) | |
| 366-587, gnl|rheMac2|chr16 (5071630-5071843) | |
| 366-587, gnl|rn3|chr10 (57798872-57799085) | |
| 366-587, gnl|tetNig1|chrUn_random (29698388-29698601) | |
| 366-587, gnl|xenTro1|scaffold_227 (1543058-1543267) |