Non-Coding RNA Search

Ss1.1-Tra1-TCH01B120014.5

Sequence:


               
               CTGAGAATCCTAGAATAAGACTTAATAGACTGACTTGGGTCACACATCTACTCTTGAAAC
AATCACTTGACCAGAGTAGGTGACACCCAGTTGACCAGGCTTGAGTAATCATGGAACCCC
TGAAGCTGATGGTACAGATAGTTCCGTGGAGTTACCTTTCACACAGAAGGGTGAATTCCA
AACATAAATCAGGCTGCTGTTAGCAGACTAAAGGAACATAAATTCTAGGCCAGCTAAAGA
AAGCATCTGACCTCTTGAGTGGTCTTGGGATTAGAGAAATAAACAATGACCTCTAGCCAA
TACTTAGTGAGTGCCAACAGTGTTCTAGGAAGTTGTAGGTCCTGGAGTCCAGCAGTAAAC
AAGAAAGGCAAAGCCAAGGCTCTCACAAGTTAAGTCAAATCAATATGTCTGTGCCCATGC
ATGTCTTTTCGGAGCACTATAAGACACTGTGCTTTCACACTCTCCCCTTTCACACAGGTT
GGAGTCTCAGAAAGCCAGAGGAATGGGCTCTATATTCCCCTTTGTTCAAGATTTTGGTGC
AGCCTGGACTTCAGGACATACTAAGTGGACATTGCAAGGCTGTACCTGTAATTTTTAGCT
CAGACCCATTTTAACTCTGCTTGGAACCACTGTGTAACTTTGAACAAATCAGTAGCCCCT
CTGAGCCTTCATTTTTCTCATTGGCGGAATGAAATGGTTGGAACAGGTGACTGCCAACCT
GTGCCTGTTTTAGCACTAAGATCCAGTGCATCTCAAAGTAGGGTCTGTAGGGATAAGACC
CATCATGAGAGGTGGGAGGACGTGTAACATGGCACTCAGCCTGTCCTTGGTGTGGGGGAG
TCAAGGGGGAACAGTGAGGACTGTGGCAGCCTGGTGAGTGTATTTCCTGTCCAAGAGCTG
CAGGGAGCTGTTGCCAGGGGAGAATACAGGCCCACTGATATCAGAATGTCCAGTTCTGGA
GTTCCTGTTGTGTCTCACCAGGTTAAGAACCAAATTAGTATCCATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGAATCCTAGAATAAGACTTAATAGACTGACTTGGGTCACACATCTACTCTTGAAAC
AATCACTTGACCAGAGTAGGTGACACCCAGTTGACCAGGCTTGAGTAATCATGGAACCCC
TGAAGCTGATGGTACAGATAGTTCCGTGGAGTTACCTTTCACACAGAAGGGTGAATTCCA
AACATAAATCAGGCTGCTGTTAGCAGACTAAAGGAACATAAATTCTAGGCCAGCTAAAGA
AAGCATCTGACCTCTTGAGTGGTCTTGGGATTAGAGAAATAAACAATGACCTCTAGCCAA
TACTTAGTGAGTGCCAACAGTGTTCTAGGAAGTTGTAGGTCCTGGAGTCCAGCAGTAAAC
AAGAAAGGCAAAGCCAAGGCTCTCACAAGTTAAGTCAAATCAATATGTCTGTGCCCATGC
ATGTCTTTTCGGAGCACTATAAGACACTGTGCTTTCACACTCTCCCCTTTCACACAGGTT
GGAGTCTCAGAAAGCCAGAGGAATGGGCTCTATATTCCCCTTTGTTCAAGATTTTGGTGC
AGCCTGGACTTCAGGACATACTAAGTGGACATTGCAAGGCTGTACCTGTAATTTTTAGCT
CAGACCCATTTTAACTCTGCTTGGAACCACTGTGTAACTTTGAACAAATCAGTAGCCCCT
CTGAGCCTTCATTTTTCTCATTGGCGGAATGAAATGGTTGGAACAGGTGACTGCCAACCT
GTGCCTGTTTTAGCACTAAGATCCAGTGCATCTCAAAGTAGGGTCTGTAGGGATAAGACC
CATCATGAGAGGTGGGAGGACGTGTAACATGGCACTCAGCCTGTCCTTGGTGTGGGGGAG
TCAAGGGGGAACAGTGAGGACTGTGGCAGCCTGGTGAGTGTATTTCCTGTCCAAGAGCTG
CAGGGAGCTGTTGCCAGGGGAGAATACAGGCCCACTGATATCAGAATGTCCAGTTCTGGA
GTTCCTGTTGTGTCTCACCAGGTTAAGAACCAAATTAGTATCCATGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               115-229, - strand, RNAz p=0.996113
               

               
               501-604, + strand, RNAz p=0.68559

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-229, - strand, RNAz p=0.996113
               

               
               501-604, + strand, RNAz p=0.68559

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-955, gnl|bosTau2|chr17 (28247951-28246980)
               

               
               6-955, gnl|Hg17|chr12 (120186390-120184441)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-955, gnl|bosTau2|chr17 (28247951-28246980)
               

               
               6-955, gnl|Hg17|chr12 (120186390-120184441)

	115-229, - strand, RNAz p=0.996113
	501-604, + strand, RNAz p=0.68559

	6-955, gnl\|bosTau2\|chr17 (28247951-28246980)
	6-955, gnl\|Hg17\|chr12 (120186390-120184441)