Non-Coding RNA Search

Ss1.1-Tra1-TCH01C010071.5

Sequence:


               
               AGTTACAAGTCTCATCCTCATAAACAAAATGAAAACGCACAGACCAGGAGGACTCAAACT
CAGTAGGCATCTTTCCATCTACCCACACCTTAAAGG------------------------
------------------------TCATGGTTCCTAGTTGGATTGGTTAACCACTGAGCC
ACAAGGGGAACTCTGAGAATAAATTCTTTATGTGACAGCCAGGATGGCCAGTCCAGTCAT
CAGGGACATTTATGAACGTGAACTGTCAGTACTTCAGGTAGCATTTCACCTGTGAGGTAG
TTGAGCTAGTCATTCAAGAAAATTATATTGTGCCAGGCACTGTGCTCCTGGGTGGGCATA
TTTTTTTTTAAAGTGTGGGAAATAACTATAGCACAGAAAGTAAATAAGGTTATAGAAGCC
AAGGTCGGTTGCCATGGGAATACCAAGGTGGTATTCATTCTTGTTCCTTGGGTAAGTGGT
CAGCCTTGACCCAAGTCCTTAAGGATGTGGTGAGTTTTTCTGCCATGGAAGGGAGGCTGC
TTTGGGCAAAAAGGCCCAGATGTCCAATGGTATCTAGAGAGGAGGGGACGAGATGGGACG
AGATGAACAGGATGAGGTGGAGAGCCGGGGAAGACCAAGCATGGAACACCTGTTGACAAG
GGACATTTGTGAACGTGAACTGTCAGTACTTCAGGTAGCACGGGTCCACCCGTGTTCTGC
TGTGGTCAGGTCACATCTGGGTATCTCATTCTCATTGGGCTCTCAACCGGTGAGAACACA
TTCGGAGAGTCCTTCCCATCAGCCTGCTTTCTTGACCTTTCCAGGTCTGTATAACCTTCT
CCCTGTCTTCATAGAAACTAGAGTCCTATTTGGAGTGTCTTACACATTCTCTGATGCTTA
GACTCCCAAACCAGTCTGTTCTTCTCAGTATCAAATCGTCCTTTTCCCAGCGCAGTTATA
AAGCTGAAGCTTGACTTGGCATAGAGGGATGATGATTCTGCTTAAAGGGGGAAAGGGGAG
AATGAGATCATGAACCAAATGAGGCATCTCACCCATGCAGCTTCGTTGCATCTCAGATCT
CAGGAAGAGGGACATTTAAATGCCCAACATCCTACAACAGAACCGACACATTCTGAAAAG
GATGTTAGCAATTTTGTCAGGATTCCCCCAAACATGACACCATGAATTTGATGTTAAGCC
AATCCTTCAGACTGGTAAGGATCTCTCTGTGATAGCTTTACTTAAGTAGAAGCCTTGAAG
GAAGGGTGGATACTGTGAACGGCCACTGTCCTGTCTCCTTCTCTGCTGCTGCTCAGCATC
TAGCACATACCAAGGGGCTCAGTCAGTCATTTCTAAATATTCTGTTCTTTTCTGTGTCTC
AAGAAATGATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTACAAGTCTCATCCTCATAAACAAAATGAAAACGCACAGACCAGGAGGACTCAAACT
CAGTAGGCATCTTTCCATCTACCCACACCTTAAAGG------------------------
------------------------TCATGGTTCCTAGTTGGATTGGTTAACCACTGAGCC
ACAAGGGGAACTCTGAGAATAAATTCTTTATGTGACAGCCAGGATGGCCAGTCCAGTCAT
CAGGGACATTTATGAACGTGAACTGTCAGTACTTCAGGTAGCATTTCACCTGTGAGGTAG
TTGAGCTAGTCATTCAAGAAAATTATATTGTGCCAGGCACTGTGCTCCTGGGTGGGCATA
TTTTTTTTTAAAGTGTGGGAAATAACTATAGCACAGAAAGTAAATAAGGTTATAGAAGCC
AAGGTCGGTTGCCATGGGAATACCAAGGTGGTATTCATTCTTGTTCCTTGGGTAAGTGGT
CAGCCTTGACCCAAGTCCTTAAGGATGTGGTGAGTTTTTCTGCCATGGAAGGGAGGCTGC
TTTGGGCAAAAAGGCCCAGATGTCCAATGGTATCTAGAGAGGAGGGGACGAGATGGGACG
AGATGAACAGGATGAGGTGGAGAGCCGGGGAAGACCAAGCATGGAACACCTGTTGACAAG
GGACATTTGTGAACGTGAACTGTCAGTACTTCAGGTAGCACGGGTCCACCCGTGTTCTGC
TGTGGTCAGGTCACATCTGGGTATCTCATTCTCATTGGGCTCTCAACCGGTGAGAACACA
TTCGGAGAGTCCTTCCCATCAGCCTGCTTTCTTGACCTTTCCAGGTCTGTATAACCTTCT
CCCTGTCTTCATAGAAACTAGAGTCCTATTTGGAGTGTCTTACACATTCTCTGATGCTTA
GACTCCCAAACCAGTCTGTTCTTCTCAGTATCAAATCGTCCTTTTCCCAGCGCAGTTATA
AAGCTGAAGCTTGACTTGGCATAGAGGGATGATGATTCTGCTTAAAGGGGGAAAGGGGAG
AATGAGATCATGAACCAAATGAGGCATCTCACCCATGCAGCTTCGTTGCATCTCAGATCT
CAGGAAGAGGGACATTTAAATGCCCAACATCCTACAACAGAACCGACACATTCTGAAAAG
GATGTTAGCAATTTTGTCAGGATTCCCCCAAACATGACACCATGAATTTGATGTTAAGCC
AATCCTTCAGACTGGTAAGGATCTCTCTGTGATAGCTTTACTTAAGTAGAAGCCTTGAAG
GAAGGGTGGATACTGTGAACGGCCACTGTCCTGTCTCCTTCTCTGCTGCTGCTCAGCATC
TAGCACATACCAAGGGGCTCAGTCAGTCATTTCTAAATATTCTGTTCTTTTCTGTGTCTC
AAGAAATGATAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1074-1186, - strand, RNAz p=0.890821

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1074-1186, - strand, RNAz p=0.890821

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               235-493, gnl|bosTau2|chr13 (21174441-21174182)
               


               
               613-1340, gnl|bosTau2|chr13 (21173484-21172773)
               

               
               613-1340, gnl|Hg17|chr10 (29872350-29871152)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               235-493, gnl|bosTau2|chr13 (21174441-21174182)
               


               
               613-1340, gnl|bosTau2|chr13 (21173484-21172773)
               

               
               613-1340, gnl|Hg17|chr10 (29872350-29871152)

	235-493, gnl\|bosTau2\|chr13 (21174441-21174182)

	613-1340, gnl\|bosTau2\|chr13 (21173484-21172773)
	613-1340, gnl\|Hg17\|chr10 (29872350-29871152)