Non-Coding RNA Search

Ss1.1-Tra1-TCH01C040103.5

Sequence:


               
               CTGCAGCATCGAGCACTTCATCTAGGGCAGGCATTTGCCAAAGCAGCAGCAAGTCATAGT
TCTAATAGTTTAGCAACAAGATTTGCCATGGTCGATAGGCTGTTTGTCAGCCAGGCTAGT
GTTCTGCCTTTGGCTATGACTTTTATATATTCCTTCCAACAGAGGCAGAACAACAGATCA
ACAAAAATCCCCAAACAGTGTACTCACTTGTCGAAAACTAGGCATTTCCCGAGCTGAGTG
AAGGTAATTGCCTTTTGACCCATGAGGTTATCGGTTCATTTCCAGAAGCATGACATGTGA
CTCCCCTGCCATTAGCATGCCGTGACTGATTGCGGCTATGTCTGCTCTAGACTTTTCCAC
CCTTAGGGAAATTAATATTTCTACCTGATCCTAGAAATAGGAAATCTATCACTTGTCACC
AGTATCTGCTTTCTCCTAAGCACCGTTTGAACCTCATCAGACTTACTTGGGGATTCTGCC
TGCAACCCTGTTCTCACTCTCCCCATGTAGTTGCCCCATGAAATGTGGTTTGCTAGCTGC
CTCGGTTCTTGGAATTGTTCAGCATTGTACTGATGCTCAATGCAAGGGCAAGAGCAGGAG
TGGGTAAGCACTTATCAGCACAGAGAATGGCAGGTAAAGATGCCTTGAAGAGAAGGATGC
AGTTGGACTATAGGTATAAGTACATTCCCGCTAATCAGTTAGTATTTGCACTTGAGCATC
TGCTGCATGGAAAACACTTGCTCCCACGGGAGTTCCCGTTGTGGCGCAGTGGTTAACGAA
TCCGACTAGGAACCATGAGGTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTGGGTTAACGA
TCCGGCGTTGCCGTGAGCTGTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGCATCGAGCACTTCATCTAGGGCAGGCATTTGCCAAAGCAGCAGCAAGTCATAGT
TCTAATAGTTTAGCAACAAGATTTGCCATGGTCGATAGGCTGTTTGTCAGCCAGGCTAGT
GTTCTGCCTTTGGCTATGACTTTTATATATTCCTTCCAACAGAGGCAGAACAACAGATCA
ACAAAAATCCCCAAACAGTGTACTCACTTGTCGAAAACTAGGCATTTCCCGAGCTGAGTG
AAGGTAATTGCCTTTTGACCCATGAGGTTATCGGTTCATTTCCAGAAGCATGACATGTGA
CTCCCCTGCCATTAGCATGCCGTGACTGATTGCGGCTATGTCTGCTCTAGACTTTTCCAC
CCTTAGGGAAATTAATATTTCTACCTGATCCTAGAAATAGGAAATCTATCACTTGTCACC
AGTATCTGCTTTCTCCTAAGCACCGTTTGAACCTCATCAGACTTACTTGGGGATTCTGCC
TGCAACCCTGTTCTCACTCTCCCCATGTAGTTGCCCCATGAAATGTGGTTTGCTAGCTGC
CTCGGTTCTTGGAATTGTTCAGCATTGTACTGATGCTCAATGCAAGGGCAAGAGCAGGAG
TGGGTAAGCACTTATCAGCACAGAGAATGGCAGGTAAAGATGCCTTGAAGAGAAGGATGC
AGTTGGACTATAGGTATAAGTACATTCCCGCTAATCAGTTAGTATTTGCACTTGAGCATC
TGCTGCATGGAAAACACTTGCTCCCACGGGAGTTCCCGTTGTGGCGCAGTGGTTAACGAA
TCCGACTAGGAACCATGAGGTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTGGGTTAACGA
TCCGGCGTTGCCGTGAGCTGTGGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               39-156, - strand, RNAz p=0.724446
               

               
               237-396, + strand, RNAz p=0.83839

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-156, - strand, RNAz p=0.724446
               

               
               237-396, + strand, RNAz p=0.83839

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-741, gnl|bosTau2|chr10 (36019118-36018364)
               

               
               1-741, gnl|Hg17|chr15 (59068156-59067399)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-741, gnl|bosTau2|chr10 (36019118-36018364)
               

               
               1-741, gnl|Hg17|chr15 (59068156-59067399)

	39-156, - strand, RNAz p=0.724446
	237-396, + strand, RNAz p=0.83839

	1-741, gnl\|bosTau2\|chr10 (36019118-36018364)
	1-741, gnl\|Hg17\|chr15 (59068156-59067399)