Non-Coding RNA Search

Ss1.1-Tra1-TCH01C080022.5

Sequence:


               
               AAACATCCATTTAGTTTTGATTTTTCATTCTTGATAGCAAAAACACTTTCCATCTACAAA
GATTCAGATTCCTGATTCTCAGGAAGATTTCCAAGTGCCCCACATGGTTTAAGCATCAGG
GGTTTTTCTGAGATATTTCAACTGCAGTCCATAAAAGAAACACACACACCACATCTCCAA
ACTGAACTTTATGGCTGAGAGATGATGAAGGGAAAGTGAAAAACTGGCCAGTACTAACCA
ACCAAAGGCCCAGGCAGGTTTTGTTTTTTTTCCCCCCAAAAAAATCAAATTCTGAGCTTT
GCATCTGAGCTGTTTAAAAGCCAGATTGCCAAAGTACCCGTGTTCCTCATTTGGGGAAAC
AAGGAAAGCATATGATGCCAGGGACCTTCATAAACTGCTGATTAGAAGTAGACCCAGGCA
CATTTGGTGTTTTCAAAGTCAGTGGAGCAACATGGTAGATTAGTTTAAAGCAAGAGGATG
AGGCAGTAGGATAGAGGAGTAGAAAAACAAGTTAAATTAATGACAGGACTAGAGTTGTAG
ATTATAGACAGTGAAGGAGAACTCACTGCCACCATTTTGCCCCAGGAAGAAACACCTGAC
AAACATCTTCCCATTGCTCAGACTCCACCCTCCGAAGTTACCATCTTCCTCCCTGTGCCC
TCACCAGACCCGCTTCGTACTCCACCAGAATAGCTGTAACATCTTACGGCCCTGGATTGT
TTGGTTTGCCCTCCTAGACTTTGGGCTCCTTGAGGATGCGCCATATTTTATGCATATTTG
AAGTTCCAGCTAATGCATAGTAAGAGCTCCGTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACATCCATTTAGTTTTGATTTTTCATTCTTGATAGCAAAAACACTTTCCATCTACAAA
GATTCAGATTCCTGATTCTCAGGAAGATTTCCAAGTGCCCCACATGGTTTAAGCATCAGG
GGTTTTTCTGAGATATTTCAACTGCAGTCCATAAAAGAAACACACACACCACATCTCCAA
ACTGAACTTTATGGCTGAGAGATGATGAAGGGAAAGTGAAAAACTGGCCAGTACTAACCA
ACCAAAGGCCCAGGCAGGTTTTGTTTTTTTTCCCCCCAAAAAAATCAAATTCTGAGCTTT
GCATCTGAGCTGTTTAAAAGCCAGATTGCCAAAGTACCCGTGTTCCTCATTTGGGGAAAC
AAGGAAAGCATATGATGCCAGGGACCTTCATAAACTGCTGATTAGAAGTAGACCCAGGCA
CATTTGGTGTTTTCAAAGTCAGTGGAGCAACATGGTAGATTAGTTTAAAGCAAGAGGATG
AGGCAGTAGGATAGAGGAGTAGAAAAACAAGTTAAATTAATGACAGGACTAGAGTTGTAG
ATTATAGACAGTGAAGGAGAACTCACTGCCACCATTTTGCCCCAGGAAGAAACACCTGAC
AAACATCTTCCCATTGCTCAGACTCCACCCTCCGAAGTTACCATCTTCCTCCCTGTGCCC
TCACCAGACCCGCTTCGTACTCCACCAGAATAGCTGTAACATCTTACGGCCCTGGATTGT
TTGGTTTGCCCTCCTAGACTTTGGGCTCCTTGAGGATGCGCCATATTTTATGCATATTTG
AAGTTCCAGCTAATGCATAGTAAGAGCTCCGTAAAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               311-429, - strand, RNAz p=0.522394
               

               
               479-597, - strand, RNAz p=0.615616

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-429, - strand, RNAz p=0.522394
               

               
               479-597, - strand, RNAz p=0.615616

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-470, gnl|bosTau2|chr23 (34575709-34576173)
               

               
               1-470, gnl|canFam2|chr35 (13974935-13975281)
               

               
               1-470, gnl|echTel1|scaffold_257105 (327-676)
               

               
               1-470, gnl|hg17|chr6 (11414856-11415189)
               

               
               1-470, gnl|Hg17|chr6 (11415331-11414870)
               

               
               1-470, gnl|mm7|chr13 (40865944-40866291)
               

               
               1-470, gnl|monDom2|scaffold_3 (98382538-98382876)
               

               
               1-470, gnl|oryCun1|scaffold_209819 (30578-30288)
               

               
               1-470, gnl|panTro1|chr5 (11691945-11692277)
               

               
               1-470, gnl|rheMac2|chr4 (11278997-11279332)
               

               
               1-470, gnl|rn3|chr17 (29243014-29242660)
               


               
               479-803, gnl|bosTau2|chr23 (34576402-34576724)
               

               
               479-803, gnl|Hg17|chr6 (11414827-11414546)
               

               
               479-803, gnl|Mm7|chr13 (40865950-40865681)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-470, gnl|bosTau2|chr23 (34575709-34576173)
               

               
               1-470, gnl|canFam2|chr35 (13974935-13975281)
               

               
               1-470, gnl|echTel1|scaffold_257105 (327-676)
               

               
               1-470, gnl|hg17|chr6 (11414856-11415189)
               

               
               1-470, gnl|Hg17|chr6 (11415331-11414870)
               

               
               1-470, gnl|mm7|chr13 (40865944-40866291)
               

               
               1-470, gnl|monDom2|scaffold_3 (98382538-98382876)
               

               
               1-470, gnl|oryCun1|scaffold_209819 (30578-30288)
               

               
               1-470, gnl|panTro1|chr5 (11691945-11692277)
               

               
               1-470, gnl|rheMac2|chr4 (11278997-11279332)
               

               
               1-470, gnl|rn3|chr17 (29243014-29242660)
               


               
               479-803, gnl|bosTau2|chr23 (34576402-34576724)
               

               
               479-803, gnl|Hg17|chr6 (11414827-11414546)
               

               
               479-803, gnl|Mm7|chr13 (40865950-40865681)

	311-429, - strand, RNAz p=0.522394
	479-597, - strand, RNAz p=0.615616

	1-470, gnl\|bosTau2\|chr23 (34575709-34576173)
	1-470, gnl\|canFam2\|chr35 (13974935-13975281)
	1-470, gnl\|echTel1\|scaffold_257105 (327-676)
	1-470, gnl\|hg17\|chr6 (11414856-11415189)
	1-470, gnl\|Hg17\|chr6 (11415331-11414870)
	1-470, gnl\|mm7\|chr13 (40865944-40866291)
	1-470, gnl\|monDom2\|scaffold_3 (98382538-98382876)
	1-470, gnl\|oryCun1\|scaffold_209819 (30578-30288)
	1-470, gnl\|panTro1\|chr5 (11691945-11692277)
	1-470, gnl\|rheMac2\|chr4 (11278997-11279332)
	1-470, gnl\|rn3\|chr17 (29243014-29242660)

	479-803, gnl\|bosTau2\|chr23 (34576402-34576724)
	479-803, gnl\|Hg17\|chr6 (11414827-11414546)
	479-803, gnl\|Mm7\|chr13 (40865950-40865681)