Non-Coding RNA Search

Ss1.1-Tra1-TCH01C100041.5

Sequence:


               
               GCCTTCCCCTAACTCTGACTGCTAGTCCCACAGTCACCCTGACAGCTGCTGCTCCTGCAT
CTCCTGAACAGATCATTGTTCATGCTTTATCTCCAGAACATCTGTTGAACACAAGTGACA
ACGTCACAGTGCAGTGTCACACACCAAGAGTCATCATTCAGACAGTCGCTACAGAGGAGA
TCACTTCTTCCATATCCCAAGCAGAACTGACCGTGGATAGTGATATTCACTCATCGGATT
TTCCTGAGCCTCCAGATGCACTAGAAGCAGACACTTTCCCAGATGAAATTCATCAGCCTA
AGATTACTGTAGAGCCATCATTTAATGATGCTCATATATCCAAATTCAGTGACCAAAATA
GCACAGAACTGATGAACAGTGTTATGGTCAGGACAGAAGAAGAAATCTCTGACAGCGACC
TTAAACAAGAAGACGCACCCTCTCCTCTAGCCCGGGCTTATGTTACTGAGGTAAGTTGCA
CTTAGGGAAACAGCCTTAAGCCTCAAACCTAGAGTTTGGGGGGAGTCTAGAAATCACTTG
GAGTGATATCTTCCAGTACCTTCCTCTTTTCTTTAGACACACAAAACAAAATGCAAACCC
CTACCTGACTGCAAAAGTAACAGCAGTGTTACTGTGTCTTAATACAGGTCCTTACTAAAC
CGTTCCCTGTCCACCTCCCGTAGTTTGAGAAATGTTTGTTGGAACCCCTGGGAGCATTTT
CCTGAGGGCGGCTTATAACACCACTCTGGTTCAGCTCAGGAACCTCATCCCACAGTGGAA
CAGCATTGTTTCTTCTATATTCAGGAGACCTGTAACTGAATTGGTTCTTTAAATTATTTT
TTGTATTTTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTCCCCTAACTCTGACTGCTAGTCCCACAGTCACCCTGACAGCTGCTGCTCCTGCAT
CTCCTGAACAGATCATTGTTCATGCTTTATCTCCAGAACATCTGTTGAACACAAGTGACA
ACGTCACAGTGCAGTGTCACACACCAAGAGTCATCATTCAGACAGTCGCTACAGAGGAGA
TCACTTCTTCCATATCCCAAGCAGAACTGACCGTGGATAGTGATATTCACTCATCGGATT
TTCCTGAGCCTCCAGATGCACTAGAAGCAGACACTTTCCCAGATGAAATTCATCAGCCTA
AGATTACTGTAGAGCCATCATTTAATGATGCTCATATATCCAAATTCAGTGACCAAAATA
GCACAGAACTGATGAACAGTGTTATGGTCAGGACAGAAGAAGAAATCTCTGACAGCGACC
TTAAACAAGAAGACGCACCCTCTCCTCTAGCCCGGGCTTATGTTACTGAGGTAAGTTGCA
CTTAGGGAAACAGCCTTAAGCCTCAAACCTAGAGTTTGGGGGGAGTCTAGAAATCACTTG
GAGTGATATCTTCCAGTACCTTCCTCTTTTCTTTAGACACACAAAACAAAATGCAAACCC
CTACCTGACTGCAAAAGTAACAGCAGTGTTACTGTGTCTTAATACAGGTCCTTACTAAAC
CGTTCCCTGTCCACCTCCCGTAGTTTGAGAAATGTTTGTTGGAACCCCTGGGAGCATTTT
CCTGAGGGCGGCTTATAACACCACTCTGGTTCAGCTCAGGAACCTCATCCCACAGTGGAA
CAGCATTGTTTCTTCTATATTCAGGAGACCTGTAACTGAATTGGTTCTTTAAATTATTTT
TTGTATTTTAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13605413|gb|AAK32706.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13605413|gb|AAK32706.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-354, - strand, RNAz p=0.97159

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-354, - strand, RNAz p=0.97159

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-531, gnl|bosTau2|chr4 (12979403-12979851)
               

               
               76-531, gnl|Hg17|chr7 (86467680-86468405)
               

               
               76-531, gnl|Mm7|chr5 (9159123-9158418)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-531, gnl|bosTau2|chr4 (12979403-12979851)
               

               
               76-531, gnl|Hg17|chr7 (86467680-86468405)
               

               
               76-531, gnl|Mm7|chr5 (9159123-9158418)

	76-531, gnl\|bosTau2\|chr4 (12979403-12979851)
	76-531, gnl\|Hg17\|chr7 (86467680-86468405)
	76-531, gnl\|Mm7\|chr5 (9159123-9158418)