Non-Coding RNA Search

Ss1.1-Tra1-TCH01D020047.5

Sequence:


               
               ATTACAAAATATTGACTCTACTTCCCTGTGCTATACAGTCAGTCCTTGTTGGTTGTCTGT
TTTATCCATAGTAATGTGTACATGTTAAGCCCAGCATCCTAATTTCTCTCTCCCTCCCTT
TCCCCTTTGATAACCGTAAGTTTGTTTTCTATGCCTTTGTGGGTGTATTTGCCCCATATC
TTTTTCTAAAAGAAATAATTGTGAAGTTGCTCAAGAGATAAGAAGTGAAGGACTTTGATG
TGGCTTTTTTTTTTTTTTTTTTAAGTCCTGGAAATAAACTCTTGAAGGGGGTGGGAAGAA
ATCAGTGAAAGTTTGTGTCAGTGATAAGCTGACTGTTTCCTGTATCACAGATGATGCTGA
TCATGAAAACCGGTATTGGAATGATCACGTATGTCAAGCATCCTGCTTGTATGCTCCACA
TGCGTTGTCTCATTTAATTCTCCCGACTTTTATGAAGTGTCTCCCGTTACCTAAGTAATG
TAAAGAGGTCAGTTGATTCATCCATGGGCACCCAGGCACCTAGGTCCATCTGAATCCATG
TTTGCACCCTTCACCACTGTGTGCTGGATTGTGTCCTTTACATTTGAATAAAACTAATAA
AGTGCTGCTAAATTTATCAGTGGCCTATGATTTCAGAGAGCCCTCCATGAACACCTGATA
ATTTCCGTATATTTTGGCACTACCGTCAAAATCAGCAGAGCAATATGCCTTGGCCTTGAA
GGATGCCAGGTCTTACCTAAGAAAATAGATGTCAACGGAAAAGCAGCTGTTGGACGTAAA
ATGCACAGACTCAGCTTATTCTTTTGCCTGCTGTTTTCGTAAATTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACAAAATATTGACTCTACTTCCCTGTGCTATACAGTCAGTCCTTGTTGGTTGTCTGT
TTTATCCATAGTAATGTGTACATGTTAAGCCCAGCATCCTAATTTCTCTCTCCCTCCCTT
TCCCCTTTGATAACCGTAAGTTTGTTTTCTATGCCTTTGTGGGTGTATTTGCCCCATATC
TTTTTCTAAAAGAAATAATTGTGAAGTTGCTCAAGAGATAAGAAGTGAAGGACTTTGATG
TGGCTTTTTTTTTTTTTTTTTTAAGTCCTGGAAATAAACTCTTGAAGGGGGTGGGAAGAA
ATCAGTGAAAGTTTGTGTCAGTGATAAGCTGACTGTTTCCTGTATCACAGATGATGCTGA
TCATGAAAACCGGTATTGGAATGATCACGTATGTCAAGCATCCTGCTTGTATGCTCCACA
TGCGTTGTCTCATTTAATTCTCCCGACTTTTATGAAGTGTCTCCCGTTACCTAAGTAATG
TAAAGAGGTCAGTTGATTCATCCATGGGCACCCAGGCACCTAGGTCCATCTGAATCCATG
TTTGCACCCTTCACCACTGTGTGCTGGATTGTGTCCTTTACATTTGAATAAAACTAATAA
AGTGCTGCTAAATTTATCAGTGGCCTATGATTTCAGAGAGCCCTCCATGAACACCTGATA
ATTTCCGTATATTTTGGCACTACCGTCAAAATCAGCAGAGCAATATGCCTTGGCCTTGAA
GGATGCCAGGTCTTACCTAAGAAAATAGATGTCAACGGAAAAGCAGCTGTTGGACGTAAA
ATGCACAGACTCAGCTTATTCTTTTGCCTGCTGTTTTCGTAAATTAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               523-642, - strand, RNAz p=0.871546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               523-642, - strand, RNAz p=0.871546

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-170, gnl|bosTau2|chr7 (23636830-23636666)
               


               
               180-828, gnl|bosTau2|chr19 (54284513-54285168)
               

               
               180-828, gnl|Hg17|chr17 (66951458-66950795)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr7 (23636830-23636666)
               


               
               180-828, gnl|bosTau2|chr19 (54284513-54285168)
               

               
               180-828, gnl|Hg17|chr17 (66951458-66950795)

	1-170, gnl\|bosTau2\|chr7 (23636830-23636666)

	180-828, gnl\|bosTau2\|chr19 (54284513-54285168)
	180-828, gnl\|Hg17\|chr17 (66951458-66950795)