Non-Coding RNA Search

Ss1.1-Tra1-TCH01D020069.5

Sequence:


               
               ATTAAAATGAACATCGCCCAGCTATGTGTTCCACGAAATTAAAGATTATGGCAAGAATGA
CAACTTCATTCAGGCGGATCATTTGGAATTACATTAAACAGCTGCTGTGAAACAGCTGAC
GGCAACGGAGAGGATTGTCATCCCGCAGCACAGGCTCCGGCGGGGCTGTGCCTGCACCGG
GTTCTGAAAAACACATCCCGCTCCCTTAGATCCACACGCAGCCTCCTCTAGTCCCCATCC
TGCTTGTTGCCAAACACTGGGCTTTCTGATCACTTTGTATTCAAGCCAGAGATCCAGGAA
GTCCAAATCCAGCCAGACAAGTGCAGAACAGCTTAGCAGAAGCAGCTTTAACAGGTGCCA
TGGGTATGGTCTTTGGGAACCTGAGACATGACAAACAGTGGGGGACATTGGGCGGCCGCG
TCTCTCCACCCCAGGTGCCCAGGATGGCATTGTCGCTGAGTAGCAGTTTGCCACCAAGGC
CAGCTCATCAATCCTTAATTGATGACATAACAATGCCAAAAATATTTAAATACCTTAGCA
GCACAAGCCCCCTGCAAACAAACTTCGGCCAGATGTCTCTTGCCTGTTCCCCCGGTTCTG
TATGTTGGAAACAGAACAGACTGGAATAAGGAGAGAGGACCTGGTTAGAATTCAAAGGGT
GAGGTGACAGATCTGATTTAAGCAGGTGCCTTCCTAGTTGGAAAAGAGGCAGTTGGGGTT
TCCTTGTGGGCAGTGGGTTAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAATGAACATCGCCCAGCTATGTGTTCCACGAAATTAAAGATTATGGCAAGAATGA
CAACTTCATTCAGGCGGATCATTTGGAATTACATTAAACAGCTGCTGTGAAACAGCTGAC
GGCAACGGAGAGGATTGTCATCCCGCAGCACAGGCTCCGGCGGGGCTGTGCCTGCACCGG
GTTCTGAAAAACACATCCCGCTCCCTTAGATCCACACGCAGCCTCCTCTAGTCCCCATCC
TGCTTGTTGCCAAACACTGGGCTTTCTGATCACTTTGTATTCAAGCCAGAGATCCAGGAA
GTCCAAATCCAGCCAGACAAGTGCAGAACAGCTTAGCAGAAGCAGCTTTAACAGGTGCCA
TGGGTATGGTCTTTGGGAACCTGAGACATGACAAACAGTGGGGGACATTGGGCGGCCGCG
TCTCTCCACCCCAGGTGCCCAGGATGGCATTGTCGCTGAGTAGCAGTTTGCCACCAAGGC
CAGCTCATCAATCCTTAATTGATGACATAACAATGCCAAAAATATTTAAATACCTTAGCA
GCACAAGCCCCCTGCAAACAAACTTCGGCCAGATGTCTCTTGCCTGTTCCCCCGGTTCTG
TATGTTGGAAACAGAACAGACTGGAATAAGGAGAGAGGACCTGGTTAGAATTCAAAGGGT
GAGGTGACAGATCTGATTTAAGCAGGTGCCTTCCTAGTTGGAAAAGAGGCAGTTGGGGTT
TCCTTGTGGGCAGTGGGTTAAAGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.596301
               

               
               157-276, - strand, RNAz p=0.970104

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.596301
               

               
               157-276, - strand, RNAz p=0.970104

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-711, gnl|bosTau2|chr16 (8090687-8091396)
               

               
               1-711, gnl|Hg17|chr1 (213311407-213310692)
               

               
               1-711, gnl|Mm7|chr1 (187501753-187502420)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-711, gnl|bosTau2|chr16 (8090687-8091396)
               

               
               1-711, gnl|Hg17|chr1 (213311407-213310692)
               

               
               1-711, gnl|Mm7|chr1 (187501753-187502420)

	1-119, - strand, RNAz p=0.596301
	157-276, - strand, RNAz p=0.970104

	1-711, gnl\|bosTau2\|chr16 (8090687-8091396)
	1-711, gnl\|Hg17\|chr1 (213311407-213310692)
	1-711, gnl\|Mm7\|chr1 (187501753-187502420)