Non-Coding RNA Search

Ss1.1-Tra1-TCH01D030014.5

Sequence:


               
               AGTAAGAAGAGAAAACCAAAACCAAGGGAGTGCAAGAGTGGCAGCAGAGAGACCTGTAAG
GAGAAAATGCATGAGGGAGTGAGCTGTCTTGTTATGGAAGCAGAGGGCCACAACCTCAAG
GTCCCCTAATGATGCCGTCTGAGGAACTGGGGCATCACATTCATCCACCAAATCCTTTTA
GGGGAGGCACTTTGTGGGGATGCCCCCCCCAGGAGAGGAGGTATCTGGGCTAATTTGACT
ACTGTTTTGGAGGAACGCAGGTGAACCCAGAGGTAGTTTCCACTACGCAAAATGTTTTTT
CCACTTCCTGTTCTTTGCTATTTTGCTTTCTTCCGGTGTTAAACCACAGAGTTTCAGAAT
CAGATGAAACTTAGCGTGAAGGCCGGCCACATGGTCTCCAGCCCCCAGAACCTGGTGACT
CAACTAGATTTCATGAGGCCAATCAAAGGACAGGCTTTTGCAATGACAGGACTCCCTGTC
CTGAATGAGGCTCTGAGAGTAAGTTTGGATTACTTGAGAATTTTCTTCTGAAGGCTGACC
TGACGGATATTGCATTTCTTCTGGGAAAGGGTCAGAGGATTTTCGCTTCAGCCCCTGCAA
CTCCCTGGAATGACTCGGGGGGTTTCTTTCACCAACATCTGGCCTCACAATCATCACTGT
GAGGAAGGAAGGAAACGCAGCAGAGTTGCTGGACCTGGGAGAGCCCCTTCAACGACAGCA
GATCACACTCTTGGAACCGGAAGTGTGGGCGTGTGTTATGTTGCTGCGCAACCAAAGGCA
ACGAAGCAGCAAACCTCAGAAGGCAGAGCCCACTACCGAGGGGGAGTTTCGAGCATGTCG
GGTCCCCCAGAGGCTGGGCCTAGCTCAATCAAGGGAAAAGTCAGCATCCAAAAGTCCTTA
ATGACGCAGAGGAAGCCAGGGGAAAAAGTCACTGGCAAGTCATCACTGACTCACAGAACG
TCTGAGAAGAAATGAGCTGCGACCCGCAGCCACGCGAACCCCTCGCTTTCCCGATAAAAA
GGAACCGGAAGCCGGAAAGTAATGGATCGGGGCCCTACTGCCAGGTCAGAGCCAGAACCA
CCGCCCTCCCGGCCTCCGCTTCGTTCTGCATTAACAGTTTGCAAACTCTCTGTCACGTGC
TTTAGTTTCATCTGATCCTGAACTGAGAGCAAATATTTGTCTTTCAAGGGAGAGGCCAAA
GGAGGACTGCTTCCTTTCCTCCTCGGAGAGGAGAAGAATACTTTTCTAATGCAAGTCTTA
TTAGGATTAAACGAGTTAATCGTTTTTGGGGATTCAAGAGAATATAATAAAGGCCATCCC
TCCTCTCTTACAAAGCTCTGGGTAATTACGGAATGGTCATGAAGAAATCAAACAAACGGC
ATGAAAATGTCAGCTTTATCACTGATAGCTCTTATATTGGAGTCAGTGGTTCTATATGTG
TGGGTAAGTGAACTCCAGGATTATATCCAGACGGGCTACCCCCCAGGCTGAGATGGGGTG
GGGGCTCCCAGTTATGGATTGTCCCTGTAAACCACTGCATCATGGGAGGACAGTGCCAGG
AGCAGCTCTGGAGGAGGCTTGCTGCCAAGAGAAAGAAGAGAGAAGCTGAGCTGTGTATTT
GGGGTTCCTACCCCCATACTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAAGAAGAGAAAACCAAAACCAAGGGAGTGCAAGAGTGGCAGCAGAGAGACCTGTAAG
GAGAAAATGCATGAGGGAGTGAGCTGTCTTGTTATGGAAGCAGAGGGCCACAACCTCAAG
GTCCCCTAATGATGCCGTCTGAGGAACTGGGGCATCACATTCATCCACCAAATCCTTTTA
GGGGAGGCACTTTGTGGGGATGCCCCCCCCAGGAGAGGAGGTATCTGGGCTAATTTGACT
ACTGTTTTGGAGGAACGCAGGTGAACCCAGAGGTAGTTTCCACTACGCAAAATGTTTTTT
CCACTTCCTGTTCTTTGCTATTTTGCTTTCTTCCGGTGTTAAACCACAGAGTTTCAGAAT
CAGATGAAACTTAGCGTGAAGGCCGGCCACATGGTCTCCAGCCCCCAGAACCTGGTGACT
CAACTAGATTTCATGAGGCCAATCAAAGGACAGGCTTTTGCAATGACAGGACTCCCTGTC
CTGAATGAGGCTCTGAGAGTAAGTTTGGATTACTTGAGAATTTTCTTCTGAAGGCTGACC
TGACGGATATTGCATTTCTTCTGGGAAAGGGTCAGAGGATTTTCGCTTCAGCCCCTGCAA
CTCCCTGGAATGACTCGGGGGGTTTCTTTCACCAACATCTGGCCTCACAATCATCACTGT
GAGGAAGGAAGGAAACGCAGCAGAGTTGCTGGACCTGGGAGAGCCCCTTCAACGACAGCA
GATCACACTCTTGGAACCGGAAGTGTGGGCGTGTGTTATGTTGCTGCGCAACCAAAGGCA
ACGAAGCAGCAAACCTCAGAAGGCAGAGCCCACTACCGAGGGGGAGTTTCGAGCATGTCG
GGTCCCCCAGAGGCTGGGCCTAGCTCAATCAAGGGAAAAGTCAGCATCCAAAAGTCCTTA
ATGACGCAGAGGAAGCCAGGGGAAAAAGTCACTGGCAAGTCATCACTGACTCACAGAACG
TCTGAGAAGAAATGAGCTGCGACCCGCAGCCACGCGAACCCCTCGCTTTCCCGATAAAAA
GGAACCGGAAGCCGGAAAGTAATGGATCGGGGCCCTACTGCCAGGTCAGAGCCAGAACCA
CCGCCCTCCCGGCCTCCGCTTCGTTCTGCATTAACAGTTTGCAAACTCTCTGTCACGTGC
TTTAGTTTCATCTGATCCTGAACTGAGAGCAAATATTTGTCTTTCAAGGGAGAGGCCAAA
GGAGGACTGCTTCCTTTCCTCCTCGGAGAGGAGAAGAATACTTTTCTAATGCAAGTCTTA
TTAGGATTAAACGAGTTAATCGTTTTTGGGGATTCAAGAGAATATAATAAAGGCCATCCC
TCCTCTCTTACAAAGCTCTGGGTAATTACGGAATGGTCATGAAGAAATCAAACAAACGGC
ATGAAAATGTCAGCTTTATCACTGATAGCTCTTATATTGGAGTCAGTGGTTCTATATGTG
TGGGTAAGTGAACTCCAGGATTATATCCAGACGGGCTACCCCCCAGGCTGAGATGGGGTG
GGGGCTCCCAGTTATGGATTGTCCCTGTAAACCACTGCATCATGGGAGGACAGTGCCAGG
AGCAGCTCTGGAGGAGGCTTGCTGCCAAGAGAAAGAAGAGAGAAGCTGAGCTGTGTATTT
GGGGTTCCTACCCCCATACTCACC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               202-560, gnl|bosTau2|chr4 (22129827-22130175)
               

               
               202-560, gnl|Hg17|chr7 (104178722-104179448)
               

               
               202-560, gnl|Mm7|chr5 (22427073-22427428)
               


               
               587-1644, gnl|bosTau2|chr4 (22130175-22131212)
               

               
               587-1644, gnl|Hg17|chr7 (104179448-104180968)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-560, gnl|bosTau2|chr4 (22129827-22130175)
               

               
               202-560, gnl|Hg17|chr7 (104178722-104179448)
               

               
               202-560, gnl|Mm7|chr5 (22427073-22427428)
               


               
               587-1644, gnl|bosTau2|chr4 (22130175-22131212)
               

               
               587-1644, gnl|Hg17|chr7 (104179448-104180968)

	202-560, gnl\|bosTau2\|chr4 (22129827-22130175)
	202-560, gnl\|Hg17\|chr7 (104178722-104179448)
	202-560, gnl\|Mm7\|chr5 (22427073-22427428)

	587-1644, gnl\|bosTau2\|chr4 (22130175-22131212)
	587-1644, gnl\|Hg17\|chr7 (104179448-104180968)