Non-Coding RNA Search

Ss1.1-Tra1-TCH01D050011.5

Sequence:


               
               TTCAGTCTCAACTTGATTATATCTGTGTGGGTTTAAGTGCTTGGAGTATAACTGAGAAGT
GTTTTTCTTGAACACAGGCATTGATCCTCTGCCAGTGAATAAATAGTTGGGAGAGGTGGG
AATGACTGACTTCTAATTATGGCCTGAAAGGAAGTTGAATTGGTAAATTGGAACGTGGAA
CCTATTCTTGTTGTTGGTGTTGCACAGAAGGATTTCTTTAGGCCACGGGAAGTGGATGGG
AGGTTTCTCCTTGATGCCCAGTGGACATCGTTATCTAACCACTCAAGTTCACACCAGAGA
GTTAGACAAGGAGAACTGGGTTGAAATGTCAGTTTATACTGGGAGTTCCCATTACTGCTC
AGCAGTAACAACCCAGCTAATAGCCATGAGGATGGAGGTTCGATCTCTGGCCTCGATCAA
TGGGTTAAGGATCCTGCATTGCCGTGAGCTGTGGTGTAGGTCACAGATGCAGCATGGGTC
TGGTGTTGCTGTGGCTGTGGTGCAGGCTGGCATCTGCAGCTCAGATCCGACGCCTAGCCC
AGAAACTTCAATATGCCACAGGTATGGCCCTAAAAAGAAAAAAAAAAAATTATATTGGTT
AGGACAGAATTGTTGTTGTTTTGGCCACACCTGCAGCATGTGAAAGTTCCCAGACCAGGG
ATGGAACCCAAGCTGCAGTTGCAGCCTATGCCACAACTAAGACAACACCAGATCCTTAAC
CTGCTGCGCACCACATGAGAACATCGAGGTTTTTATTTTTAAATAATGGGTTAGTGTCAG
AGAAAGTGATGCTAGCACCCGAGTAGGGTGAAGAGAGCTCAGTCAGTATGCACACTGGTT
ACACATTTAGCCATAGATTCAGATGATTCTCAGGTATTTTAAGGAAAATGTTTTTCTCCT
AGGTTTCACATCTTTTTTTCTTCTCACTTATCTGCCTCCTGTCATTCCCCAGAAACCTCT
ATTCCAGCAGTGGAAGTGAGGAAGTCGTAGAAAAGAGGATAGAACGAGCAGCCAGACCTC
CTGGCTGTGCCCCAGTGCACAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGTCTCAACTTGATTATATCTGTGTGGGTTTAAGTGCTTGGAGTATAACTGAGAAGT
GTTTTTCTTGAACACAGGCATTGATCCTCTGCCAGTGAATAAATAGTTGGGAGAGGTGGG
AATGACTGACTTCTAATTATGGCCTGAAAGGAAGTTGAATTGGTAAATTGGAACGTGGAA
CCTATTCTTGTTGTTGGTGTTGCACAGAAGGATTTCTTTAGGCCACGGGAAGTGGATGGG
AGGTTTCTCCTTGATGCCCAGTGGACATCGTTATCTAACCACTCAAGTTCACACCAGAGA
GTTAGACAAGGAGAACTGGGTTGAAATGTCAGTTTATACTGGGAGTTCCCATTACTGCTC
AGCAGTAACAACCCAGCTAATAGCCATGAGGATGGAGGTTCGATCTCTGGCCTCGATCAA
TGGGTTAAGGATCCTGCATTGCCGTGAGCTGTGGTGTAGGTCACAGATGCAGCATGGGTC
TGGTGTTGCTGTGGCTGTGGTGCAGGCTGGCATCTGCAGCTCAGATCCGACGCCTAGCCC
AGAAACTTCAATATGCCACAGGTATGGCCCTAAAAAGAAAAAAAAAAAATTATATTGGTT
AGGACAGAATTGTTGTTGTTTTGGCCACACCTGCAGCATGTGAAAGTTCCCAGACCAGGG
ATGGAACCCAAGCTGCAGTTGCAGCCTATGCCACAACTAAGACAACACCAGATCCTTAAC
CTGCTGCGCACCACATGAGAACATCGAGGTTTTTATTTTTAAATAATGGGTTAGTGTCAG
AGAAAGTGATGCTAGCACCCGAGTAGGGTGAAGAGAGCTCAGTCAGTATGCACACTGGTT
ACACATTTAGCCATAGATTCAGATGATTCTCAGGTATTTTAAGGAAAATGTTTTTCTCCT
AGGTTTCACATCTTTTTTTCTTCTCACTTATCTGCCTCCTGTCATTCCCCAGAAACCTCT
ATTCCAGCAGTGGAAGTGAGGAAGTCGTAGAAAAGAGGATAGAACGAGCAGCCAGACCTC
CTGGCTGTGCCCCAGTGCACAACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               930-1042, - strand, RNAz p=0.915048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               930-1042, - strand, RNAz p=0.915048

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               17-301, gnl|bosTau2|chr5 (18802296-18802014)
               

               
               17-301, gnl|Hg17|chr12 (49761549-49760850)
               

               
               17-301, gnl|Mm7|chr15 (100478435-100478035)
               


               
               750-1042, gnl|bosTau2|chr5 (18801947-18801652)
               

               
               750-1042, gnl|Hg17|chr12 (49760794-49760456)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-301, gnl|bosTau2|chr5 (18802296-18802014)
               

               
               17-301, gnl|Hg17|chr12 (49761549-49760850)
               

               
               17-301, gnl|Mm7|chr15 (100478435-100478035)
               


               
               750-1042, gnl|bosTau2|chr5 (18801947-18801652)
               

               
               750-1042, gnl|Hg17|chr12 (49760794-49760456)

	17-301, gnl\|bosTau2\|chr5 (18802296-18802014)
	17-301, gnl\|Hg17\|chr12 (49761549-49760850)
	17-301, gnl\|Mm7\|chr15 (100478435-100478035)

	750-1042, gnl\|bosTau2\|chr5 (18801947-18801652)
	750-1042, gnl\|Hg17\|chr12 (49760794-49760456)