Non-Coding RNA Search

Ss1.1-Tra1-TCH01D050093.5

Sequence:


               
               AACAATGAGTGGTTCCGATTTGTCACCTTCCAGCAACCCTGTGACCTGGGGGGTGACTCC
ATTTTACAAGCCCTTGACCAAAGAGCCGGAAATAGAGATTCACAGCGGCTCAGGGGAAGA
CGGCGAACAACCTGAGGACAAAAACCAAAACGGCTCTGTGACATGGACGAAGATCAGAGC
ACCTGGAAATGCTGCTCCAGTGGAAAGGAGCACTGACATGCCGCTTGGACCTCTGCCAAC
ACCTTATCTTAAGGGAGCATCCTTGTGGCCACCCTTCAGCACAGTGTCAGAAGGACTGCT
GCCCAGCCAAAGGCCCGCCACGCTCAAGAATGGTGCCCCCAGCACCGAGGGGATGGTCGC
TGAAAAGCCAGCGAACACTCCACCCCCTCTGGGAGAAGACCACCAGCCAGCATACTCGGA
AAAGTCCATCAACCATCACCCCCTAGAATTGCCGAGCAGCGTGAATCTGACACAGAGTTC
CGGGCCAGGTCTGACGGAGGAGGATGCAACAAGCCTGATCGCTGAGGGGTTTTTGCTGAA
TGCCTCGGATTACAAGCAGCTCTCGATGGGCCGAAGCCCTGCGCACTGGATTGTTGGAAA
CTGGAGTGAGTGCTCCACCACGTGCGGGCTGGGGGCCTACTGGCGGAGCGTGGAATGCAG
CACCCACGTAGACTCCGACTGCGCAGCCATCCAGAGGCCTGACCCAGCCAAGAAGTGCCA
CCTCCGTCCCTGTGCCGGCTGGAAAGTGGGAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAATGAGTGGTTCCGATTTGTCACCTTCCAGCAACCCTGTGACCTGGGGGGTGACTCC
ATTTTACAAGCCCTTGACCAAAGAGCCGGAAATAGAGATTCACAGCGGCTCAGGGGAAGA
CGGCGAACAACCTGAGGACAAAAACCAAAACGGCTCTGTGACATGGACGAAGATCAGAGC
ACCTGGAAATGCTGCTCCAGTGGAAAGGAGCACTGACATGCCGCTTGGACCTCTGCCAAC
ACCTTATCTTAAGGGAGCATCCTTGTGGCCACCCTTCAGCACAGTGTCAGAAGGACTGCT
GCCCAGCCAAAGGCCCGCCACGCTCAAGAATGGTGCCCCCAGCACCGAGGGGATGGTCGC
TGAAAAGCCAGCGAACACTCCACCCCCTCTGGGAGAAGACCACCAGCCAGCATACTCGGA
AAAGTCCATCAACCATCACCCCCTAGAATTGCCGAGCAGCGTGAATCTGACACAGAGTTC
CGGGCCAGGTCTGACGGAGGAGGATGCAACAAGCCTGATCGCTGAGGGGTTTTTGCTGAA
TGCCTCGGATTACAAGCAGCTCTCGATGGGCCGAAGCCCTGCGCACTGGATTGTTGGAAA
CTGGAGTGAGTGCTCCACCACGTGCGGGCTGGGGGCCTACTGGCGGAGCGTGGAATGCAG
CACCCACGTAGACTCCGACTGCGCAGCCATCCAGAGGCCTGACCCAGCCAAGAAGTGCCA
CCTCCGTCCCTGTGCCGGCTGGAAAGTGGGAAACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874880|ref|XP_603626.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874880|ref|XP_603626.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               241-360, + strand, RNAz p=0.601767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-360, + strand, RNAz p=0.601767

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-610, gnl|bosTau2|chr16 (45594512-45593904)
               

               
               2-610, gnl|Hg17|chr5 (33612521-33611916)
               

               
               2-610, gnl|Mm7|chr15 (11369220-11369816)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-610, gnl|bosTau2|chr16 (45594512-45593904)
               

               
               2-610, gnl|Hg17|chr5 (33612521-33611916)
               

               
               2-610, gnl|Mm7|chr15 (11369220-11369816)

	2-610, gnl\|bosTau2\|chr16 (45594512-45593904)
	2-610, gnl\|Hg17\|chr5 (33612521-33611916)
	2-610, gnl\|Mm7\|chr15 (11369220-11369816)