Non-Coding RNA Search

Ss1.1-Tra1-TCH01D060082.5

Sequence:


               
               TGCAGCTCTCATAGACTTGTCATGATGGATCAAGGCTTCATTCCCCCGAAACTTCAGGTG
CAAATGAGCTGTCAGGGGTGGTTTTCAGAGAGCAATGAAGAGCCCCTTCCTTAGAAGCTG
GGAGAGTCTGGATCTCCCGTTTTAGTCCAAGGAAGCTAAATGGCACTTGCAACCCAAAAT
ATGTAATGATTCACCCCTTGGTAATAAAGCAGCCTTGGAAAACTCCCTAGAGGGATTAAT
CTTAATCGGCAATTAAGATAAAGTCAGGGCACATGCTAATCCAGGGCTTAATCGAAGACA
GTTTAATGTGCTGCTGTGGTGTAGATGTAAGACTGGGTTTCCACTAATTGAGCCTGGAAT
GTGGGTGTGAGGAGGAGGAACCACAGCACAAGGACAGCCTGCACATCCACGGCTACAGAA
GGCTTTGCACAAGCACTGGGCAGTCTCGGGCTCAGCCACGACCGTGGATGGCTCGCCCTG
CTGTTCTGGCTCCCAGGTAAATGTAGGCCCCACTGTCTTTACAGCAATGCAACCAGAGAC
AAAGGGAAAGCAAGTTGTTAATATGGTGTACAGATCACTTGTTGCCTAGCTACCCTGTTC
TGAAAGCCCTGATTCTTGAGGTGATCAACAGTTCACCCAAGGTGTGGAGACCAATATGAA
TACGAGGAAAAGCAAAATCAAAAAAGAAAACAATTTAGAACAGTTTTCAAAGAAAATTAA
ACCCCGTGTCATGGTTGGGTTCTTCCTAGAATTTCCTTTTCTTCGTATTTCTAAATCCAG
ACCATCATGCGATACAGTTTGTAAGTGTAAATTCCCAGGGACCATGACATAGGACCATAG
CTTAGCCAGAGAATCCTGACACATGCTCTCCAGTTGGTTTTCTCTCCAGTTGTGTCATTT
TTAAGTCTCATCTTGTCAATCATTATTTGAAGATTTGACGCGGGCATTAGCCAGGAAGTC
TTCATGAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGCTCTCATAGACTTGTCATGATGGATCAAGGCTTCATTCCCCCGAAACTTCAGGTG
CAAATGAGCTGTCAGGGGTGGTTTTCAGAGAGCAATGAAGAGCCCCTTCCTTAGAAGCTG
GGAGAGTCTGGATCTCCCGTTTTAGTCCAAGGAAGCTAAATGGCACTTGCAACCCAAAAT
ATGTAATGATTCACCCCTTGGTAATAAAGCAGCCTTGGAAAACTCCCTAGAGGGATTAAT
CTTAATCGGCAATTAAGATAAAGTCAGGGCACATGCTAATCCAGGGCTTAATCGAAGACA
GTTTAATGTGCTGCTGTGGTGTAGATGTAAGACTGGGTTTCCACTAATTGAGCCTGGAAT
GTGGGTGTGAGGAGGAGGAACCACAGCACAAGGACAGCCTGCACATCCACGGCTACAGAA
GGCTTTGCACAAGCACTGGGCAGTCTCGGGCTCAGCCACGACCGTGGATGGCTCGCCCTG
CTGTTCTGGCTCCCAGGTAAATGTAGGCCCCACTGTCTTTACAGCAATGCAACCAGAGAC
AAAGGGAAAGCAAGTTGTTAATATGGTGTACAGATCACTTGTTGCCTAGCTACCCTGTTC
TGAAAGCCCTGATTCTTGAGGTGATCAACAGTTCACCCAAGGTGTGGAGACCAATATGAA
TACGAGGAAAAGCAAAATCAAAAAAGAAAACAATTTAGAACAGTTTTCAAAGAAAATTAA
ACCCCGTGTCATGGTTGGGTTCTTCCTAGAATTTCCTTTTCTTCGTATTTCTAAATCCAG
ACCATCATGCGATACAGTTTGTAAGTGTAAATTCCCAGGGACCATGACATAGGACCATAG
CTTAGCCAGAGAATCCTGACACATGCTCTCCAGTTGGTTTTCTCTCCAGTTGTGTCATTT
TTAAGTCTCATCTTGTCAATCATTATTTGAAGATTTGACGCGGGCATTAGCCAGGAAGTC
TTCATGAGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-313, + strand, RNAz p=0.884603

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-313, + strand, RNAz p=0.884603

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-971, gnl|bosTau2|chr10 (37893591-37894545)
               

               
               3-971, gnl|Hg17|chr15 (58852675-58851457)
               

               
               3-971, gnl|Mm7|chr9 (69136173-69137357)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-971, gnl|bosTau2|chr10 (37893591-37894545)
               

               
               3-971, gnl|Hg17|chr15 (58852675-58851457)
               

               
               3-971, gnl|Mm7|chr9 (69136173-69137357)

	3-971, gnl\|bosTau2\|chr10 (37893591-37894545)
	3-971, gnl\|Hg17\|chr15 (58852675-58851457)
	3-971, gnl\|Mm7\|chr9 (69136173-69137357)