Ss1.1-Tra1-TCH01D100033.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTATCAGTATCTGCGGGAGGAGGACTTGGAGGATGGCTCAAAGGGCGGCGGGGACATT TTGAAGTCGTTGGAGAACACGGTTACCACCGCCATCAACAAAGCCCAGAACGGAGCCCCC AGCTGGAGCGCGTACCCCAGCATCCACGCGGCCTACCAGCTGTCGGAGGGCACCAAGCCT TCTTTGCCCATGGGCTCCCAGGTACTGCAGATTCGCCCTAACCTCGCCAACAAGTTGAGG CCGATCGCACCCAAGTGGAAGGTGATGCCGCTGGTTTCCGTGCCCACAAGCCTGGCCCCG TACACTCAAGTTAAGAAGGAGCCAGAAGACAAAGAGGAAGTCGCGAAGGACTGCGGGCAG GAAAGTCCCCACGAAGAGGCATCGTCCTTCAGCCACAGTGAGGGGGATTCTTTCCCCAAA AGCGAACCCCCGGCAGAATCCAAAAAGGCTGAGCCCTGTCCCCTGAGGGAGGAGGACAAG CGGATGAACGACGGCGGCGAGAAAGAGAAAGCCCAGCCGGTGGAGCCCGTGTCTTCTCTC AGCAACGGCTGCGCCCTGGCCACCCACGCTCCGGCCCCGCCGTGTGTCAACCCGCTCAGT GCCCTGCAGTCCGTCCTGAACAATCACCTGGGCAAAGCCACGGAGCCCTTGCGATCCCCT TCCTGCTCCAGCCCGAGCTCAAGCACAATGGCCATGTTCCACAAGTCGAGCCTCGGTGTC ATGGACAAGCCGGTTCTGAGTCCTGCCTCCACCAGGCCGGCCAGCGTGTCCCGACGCTAC CTGTTTGAGAACAACGATCAGCCCATCGACCTGACCAAGTCCAAAAGTAAGAAGGCCGAG TCCTCGCAAGCACAATCCTGCACGTCCCCACCCCAGAAGCACGCGCTCTCTGACATCGCG GACATGGTCAAAGTCCTGCCCAAAGCCACCACCCCGAAGCCCGCCGCCTCCTCCAGGGTC CCTCCGGTGAAGCTGGAGATGGACGTCAGGCGTTTTGAGGACGTGTCCAGCGAGGTCTCG ACCTTGCATAAAAGGAAAGGCCGACAGTCCAACTGGAACCCTCAGCATCTTCTGATCCTG CAGGCTCAGTTTGCCTCCAGCCTCTTCCAGACCTCGGAGGGCAAATACCTGCTGTCCGAC CTGGGTCCCCAGGAGCGAATGCAGATCTCGAAGTTCACGGGACTCTCAATGACCACCATC AGCCACTGGCTCGCCAACGTCAAGTACCAACTTAGGAAAACGGGCGGGACGAAATTTCTG AAAAACATGGACAAAGGACACCCTATCTTTTACTGCAGTGACTGTGCCTCCCAGTTCCGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTATCAGTATCTGCGGGAGGAGGACTTGGAGGATGGCTCAAAGGGCGGCGGGGACATT TTGAAGTCGTTGGAGAACACGGTTACCACCGCCATCAACAAAGCCCAGAACGGAGCCCCC AGCTGGAGCGCGTACCCCAGCATCCACGCGGCCTACCAGCTGTCGGAGGGCACCAAGCCT TCTTTGCCCATGGGCTCCCAGGTACTGCAGATTCGCCCTAACCTCGCCAACAAGTTGAGG CCGATCGCACCCAAGTGGAAGGTGATGCCGCTGGTTTCCGTGCCCACAAGCCTGGCCCCG TACACTCAAGTTAAGAAGGAGCCAGAAGACAAAGAGGAAGTCGCGAAGGACTGCGGGCAG GAAAGTCCCCACGAAGAGGCATCGTCCTTCAGCCACAGTGAGGGGGATTCTTTCCCCAAA AGCGAACCCCCGGCAGAATCCAAAAAGGCTGAGCCCTGTCCCCTGAGGGAGGAGGACAAG CGGATGAACGACGGCGGCGAGAAAGAGAAAGCCCAGCCGGTGGAGCCCGTGTCTTCTCTC AGCAACGGCTGCGCCCTGGCCACCCACGCTCCGGCCCCGCCGTGTGTCAACCCGCTCAGT GCCCTGCAGTCCGTCCTGAACAATCACCTGGGCAAAGCCACGGAGCCCTTGCGATCCCCT TCCTGCTCCAGCCCGAGCTCAAGCACAATGGCCATGTTCCACAAGTCGAGCCTCGGTGTC ATGGACAAGCCGGTTCTGAGTCCTGCCTCCACCAGGCCGGCCAGCGTGTCCCGACGCTAC CTGTTTGAGAACAACGATCAGCCCATCGACCTGACCAAGTCCAAAAGTAAGAAGGCCGAG TCCTCGCAAGCACAATCCTGCACGTCCCCACCCCAGAAGCACGCGCTCTCTGACATCGCG GACATGGTCAAAGTCCTGCCCAAAGCCACCACCCCGAAGCCCGCCGCCTCCTCCAGGGTC CCTCCGGTGAAGCTGGAGATGGACGTCAGGCGTTTTGAGGACGTGTCCAGCGAGGTCTCG ACCTTGCATAAAAGGAAAGGCCGACAGTCCAACTGGAACCCTCAGCATCTTCTGATCCTG CAGGCTCAGTTTGCCTCCAGCCTCTTCCAGACCTCGGAGGGCAAATACCTGCTGTCCGAC CTGGGTCCCCAGGAGCGAATGCAGATCTCGAAGTTCACGGGACTCTCAATGACCACCATC AGCCACTGGCTCGCCAACGTCAAGTACCAACTTAGGAAAACGGGCGGGACGAAATTTCTG AAAAACATGGACAAAGGACACCCTATCTTTTACTGCAGTGACTGTGCCTCCCAGTTCCGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1042-1161, - strand, RNAz p=0.623654 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1042-1161, - strand, RNAz p=0.623654 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-161, gnl|bosTau2|chr18 (34909879-34910039) | |
| 1-161, gnl|canFam2|chr1 (123368440-123367021) | |
| 1-161, gnl|danRer3|chr7 (37565515-37566970) | |
| 1-161, gnl|dasNov1|scaffold_3665 (59634-61053) | |
| 1-161, gnl|echTel1|scaffold_305443 (5096-3581) | |
| 1-161, gnl|fr1|chrUn (172575666-172577189) | |
| 1-161, gnl|galGal2|chr11 (9426360-9427779) | |
| 1-161, gnl|hg17|chr19 (36460577-36461996) | |
| 1-161, gnl|Hg17|chr19 (36461032-36460872) | |
| 1-161, gnl|loxAfr1|scaffold_49711 (6479-5060) | |
| 1-161, gnl|mm7|chr7 (33661706-33660287) | |
| 1-161, gnl|Mm7|chr7 (33661249-33661409) | |
| 1-161, gnl|monDom2|scaffold_35 (5927478-5926059) | |
| 1-161, gnl|oryCun1|scaffold_198133 (8832-10269) | |
| 1-161, gnl|panTro1|chr20 (32950683-32952102) | |
| 1-161, gnl|rheMac2|chr19 (37784599-37786018) | |
| 1-161, gnl|rn3|chr1 (89311490-89310071) | |
| 1-161, gnl|tetNig1|chrUn_random (54358753-54357209) | |
| 1-161, gnl|xenTro1|scaffold_83 (1500029-1498616) | |
| 564-1320, gnl|bosTau2|chr24 (3539055-3538319) | |
| 564-1320, gnl|Hg17|chr18 (71128555-71129290) | |
| 564-1320, gnl|Mm7|chr18 (84363192-84362457) | |
| 865-1313, gnl|bosTau2|chr18 (34910881-34911323) | |
| 865-1313, gnl|canFam2|chr1 (123369744-123368531) | |
| 865-1313, gnl|danRer3|chr7 (37564121-37565418) | |
| 865-1313, gnl|dasNov1|scaffold_3665 (58329-59543) | |
| 865-1313, gnl|echTel1|scaffold_305443 (6388-5187) | |
| 865-1313, gnl|fr1|chrUn (172574184-172575553) | |
| 865-1313, gnl|galGal2|chr11 (9425062-9426272) | |
| 865-1313, gnl|hg17|chr19 (36459273-36460486) | |
| 865-1313, gnl|Hg17|chr19 (36460030-36459588) | |
| 865-1313, gnl|loxAfr1|scaffold_49711 (7781-6569) | |
| 865-1313, gnl|mm7|chr7 (33663011-33661797) | |
| 865-1313, gnl|Mm7|chr7 (33662251-33662693) | |
| 865-1313, gnl|monDom2|scaffold_35 (5928779-5927569) | |
| 865-1313, gnl|oryCun1|scaffold_198133 (7527-8741) | |
| 865-1313, gnl|panTro1|chr20 (32949379-32950592) | |
| 865-1313, gnl|rheMac2|chr19 (37783295-37784508) | |
| 865-1313, gnl|rn3|chr1 (89312798-89311581) | |
| 865-1313, gnl|tetNig1|chrUn_random (54360149-54358868) | |
| 865-1313, gnl|xenTro1|scaffold_83 (1501341-1500117) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-161, gnl|bosTau2|chr18 (34909879-34910039) | |
| 1-161, gnl|canFam2|chr1 (123368440-123367021) | |
| 1-161, gnl|danRer3|chr7 (37565515-37566970) | |
| 1-161, gnl|dasNov1|scaffold_3665 (59634-61053) | |
| 1-161, gnl|echTel1|scaffold_305443 (5096-3581) | |
| 1-161, gnl|fr1|chrUn (172575666-172577189) | |
| 1-161, gnl|galGal2|chr11 (9426360-9427779) | |
| 1-161, gnl|hg17|chr19 (36460577-36461996) | |
| 1-161, gnl|Hg17|chr19 (36461032-36460872) | |
| 1-161, gnl|loxAfr1|scaffold_49711 (6479-5060) | |
| 1-161, gnl|mm7|chr7 (33661706-33660287) | |
| 1-161, gnl|Mm7|chr7 (33661249-33661409) | |
| 1-161, gnl|monDom2|scaffold_35 (5927478-5926059) | |
| 1-161, gnl|oryCun1|scaffold_198133 (8832-10269) | |
| 1-161, gnl|panTro1|chr20 (32950683-32952102) | |
| 1-161, gnl|rheMac2|chr19 (37784599-37786018) | |
| 1-161, gnl|rn3|chr1 (89311490-89310071) | |
| 1-161, gnl|tetNig1|chrUn_random (54358753-54357209) | |
| 1-161, gnl|xenTro1|scaffold_83 (1500029-1498616) | |
| 564-1320, gnl|bosTau2|chr24 (3539055-3538319) | |
| 564-1320, gnl|Hg17|chr18 (71128555-71129290) | |
| 564-1320, gnl|Mm7|chr18 (84363192-84362457) | |
| 865-1313, gnl|bosTau2|chr18 (34910881-34911323) | |
| 865-1313, gnl|canFam2|chr1 (123369744-123368531) | |
| 865-1313, gnl|danRer3|chr7 (37564121-37565418) | |
| 865-1313, gnl|dasNov1|scaffold_3665 (58329-59543) | |
| 865-1313, gnl|echTel1|scaffold_305443 (6388-5187) | |
| 865-1313, gnl|fr1|chrUn (172574184-172575553) | |
| 865-1313, gnl|galGal2|chr11 (9425062-9426272) | |
| 865-1313, gnl|hg17|chr19 (36459273-36460486) | |
| 865-1313, gnl|Hg17|chr19 (36460030-36459588) | |
| 865-1313, gnl|loxAfr1|scaffold_49711 (7781-6569) | |
| 865-1313, gnl|mm7|chr7 (33663011-33661797) | |
| 865-1313, gnl|Mm7|chr7 (33662251-33662693) | |
| 865-1313, gnl|monDom2|scaffold_35 (5928779-5927569) | |
| 865-1313, gnl|oryCun1|scaffold_198133 (7527-8741) | |
| 865-1313, gnl|panTro1|chr20 (32949379-32950592) | |
| 865-1313, gnl|rheMac2|chr19 (37783295-37784508) | |
| 865-1313, gnl|rn3|chr1 (89312798-89311581) | |
| 865-1313, gnl|tetNig1|chrUn_random (54360149-54358868) | |
| 865-1313, gnl|xenTro1|scaffold_83 (1501341-1500117) |