Non-Coding RNA Search

Ss1.1-Tra1-TCH01D100076.5

Sequence:


               
               CTTGACATCTAGCTCATCTGCCCTTCACAAACAAGCCAAGGTTCAGAGAGGTGAAGCCAC
CAGCTTGAGATCACACAGCTAGCCAGTGCCGGGGGAGATTCAAAGACAGGCCTGTCAGGC
TCCAGGACTGCCGTCTTCTCAGCTCTTCCCTCCCTGGGCCCAAGGAGGACACGTGTGAGG
GAGCCGAGGAAGGGGATGGGTGCGTGGGTGGGGGCCCCTCCAGAAAGAAAGGGCACGGCT
CGGGAGCTTGCATGGCCCCGACCTTGGCCCTCTCCCACAGCAGTGCCATCTGGCTCGCAG
ATGTGGCGTGTGCCCAGCCCGTCGTGTTTCTTGGAAATGAGCGAGGCCAGGAGAGGGGAC
AGGGGCTTTTGCAACGACTGTGACGACACGAGCTTTGTTTTGTGGTCACCCAGTCAGCCG
CTACCCAAGCGCAGGAGGCAGCTGGGTTGAGCGTGAGTAGCCCAGGGTTCCAGCCAGCCT
GAGACCCTCACCTGGAGTCCCCTGGATGCCTGCCGAGCCTCTGAGCCTCAGGGAGCAGGG
ACGTCACCCCCACCTCTGGCCGTGGCTGCCTGTGCTCCTCAGGTTACAGGCCGGAGAGCG
TTTCGTAGGCTGAAAGCTTGTGCCGCTGGAATTGGTCACAGGTGGCTCCAGGGCTGCCCC
TTCGGTCTTGGCCACTGTGTTAACCCCAAGTTTCCATCTGCCCCAAAATGGCTTCTTTCC
CATGTGTGAGGCCGGAAGTGGGGGCCATGGGTCGGAGGGGCCTCTGGCAAGTTTCACTCT
AGACCCGTGCTTTGGCAGATGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGACATCTAGCTCATCTGCCCTTCACAAACAAGCCAAGGTTCAGAGAGGTGAAGCCAC
CAGCTTGAGATCACACAGCTAGCCAGTGCCGGGGGAGATTCAAAGACAGGCCTGTCAGGC
TCCAGGACTGCCGTCTTCTCAGCTCTTCCCTCCCTGGGCCCAAGGAGGACACGTGTGAGG
GAGCCGAGGAAGGGGATGGGTGCGTGGGTGGGGGCCCCTCCAGAAAGAAAGGGCACGGCT
CGGGAGCTTGCATGGCCCCGACCTTGGCCCTCTCCCACAGCAGTGCCATCTGGCTCGCAG
ATGTGGCGTGTGCCCAGCCCGTCGTGTTTCTTGGAAATGAGCGAGGCCAGGAGAGGGGAC
AGGGGCTTTTGCAACGACTGTGACGACACGAGCTTTGTTTTGTGGTCACCCAGTCAGCCG
CTACCCAAGCGCAGGAGGCAGCTGGGTTGAGCGTGAGTAGCCCAGGGTTCCAGCCAGCCT
GAGACCCTCACCTGGAGTCCCCTGGATGCCTGCCGAGCCTCTGAGCCTCAGGGAGCAGGG
ACGTCACCCCCACCTCTGGCCGTGGCTGCCTGTGCTCCTCAGGTTACAGGCCGGAGAGCG
TTTCGTAGGCTGAAAGCTTGTGCCGCTGGAATTGGTCACAGGTGGCTCCAGGGCTGCCCC
TTCGGTCTTGGCCACTGTGTTAACCCCAAGTTTCCATCTGCCCCAAAATGGCTTCTTTCC
CATGTGTGAGGCCGGAAGTGGGGGCCATGGGTCGGAGGGGCCTCTGGCAAGTTTCACTCT
AGACCCGTGCTTTGGCAGATGCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               175-283, - strand, RNAz p=0.999841

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-283, - strand, RNAz p=0.999841

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-150, gnl|bosTau2|chr7 (42146799-42146647)
               

               
               1-150, gnl|canFam2|chr4 (62745835-62745246)
               

               
               1-150, gnl|dasNov1|scaffold_33402 (40124-40706)
               

               
               1-150, gnl|echTel1|scaffold_182842 (3571-3042)
               

               
               1-150, gnl|hg17|chr5 (148779999-148780611)
               

               
               1-150, gnl|Hg17|chr5 (148780074-148780234)
               

               
               1-150, gnl|loxAfr1|scaffold_67672 (27424-28012)
               

               
               1-150, gnl|mm7|chr18 (62044974-62044571)
               

               
               1-150, gnl|oryCun1|scaffold_204910 (34968-34393)
               

               
               1-150, gnl|panTro1|chr4 (155675404-155676020)
               

               
               1-150, gnl|rheMac2|chr6 (145893079-145893689)
               

               
               1-150, gnl|rn3|chr18 (57704072-57703703)
               


               
               175-804, gnl|bosTau2|chr7 (42146578-42145941)
               

               
               175-804, gnl|Hg17|chr5 (148780303-148780935)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-150, gnl|bosTau2|chr7 (42146799-42146647)
               

               
               1-150, gnl|canFam2|chr4 (62745835-62745246)
               

               
               1-150, gnl|dasNov1|scaffold_33402 (40124-40706)
               

               
               1-150, gnl|echTel1|scaffold_182842 (3571-3042)
               

               
               1-150, gnl|hg17|chr5 (148779999-148780611)
               

               
               1-150, gnl|Hg17|chr5 (148780074-148780234)
               

               
               1-150, gnl|loxAfr1|scaffold_67672 (27424-28012)
               

               
               1-150, gnl|mm7|chr18 (62044974-62044571)
               

               
               1-150, gnl|oryCun1|scaffold_204910 (34968-34393)
               

               
               1-150, gnl|panTro1|chr4 (155675404-155676020)
               

               
               1-150, gnl|rheMac2|chr6 (145893079-145893689)
               

               
               1-150, gnl|rn3|chr18 (57704072-57703703)
               


               
               175-804, gnl|bosTau2|chr7 (42146578-42145941)
               

               
               175-804, gnl|Hg17|chr5 (148780303-148780935)

	1-150, gnl\|bosTau2\|chr7 (42146799-42146647)
	1-150, gnl\|canFam2\|chr4 (62745835-62745246)
	1-150, gnl\|dasNov1\|scaffold_33402 (40124-40706)
	1-150, gnl\|echTel1\|scaffold_182842 (3571-3042)
	1-150, gnl\|hg17\|chr5 (148779999-148780611)
	1-150, gnl\|Hg17\|chr5 (148780074-148780234)
	1-150, gnl\|loxAfr1\|scaffold_67672 (27424-28012)
	1-150, gnl\|mm7\|chr18 (62044974-62044571)
	1-150, gnl\|oryCun1\|scaffold_204910 (34968-34393)
	1-150, gnl\|panTro1\|chr4 (155675404-155676020)
	1-150, gnl\|rheMac2\|chr6 (145893079-145893689)
	1-150, gnl\|rn3\|chr18 (57704072-57703703)

	175-804, gnl\|bosTau2\|chr7 (42146578-42145941)
	175-804, gnl\|Hg17\|chr5 (148780303-148780935)