Non-Coding RNA Search

Ss1.1-Tra1-TCH01D110018.5

Sequence:


               
               GGGAATTCTCTGGTTTATATGTTACGAAATGTTCACCAGGTCAATTCTAGTTACCATCTG
TCACCGTACAAAGTTATTTCACTATTACTGACTGTCTCTTGGGGGTCAGTTTTTTGCACG
TCTCTTGGAAGCGGTGGGAAGAACAGACACGGTGTTCTTCGCCTTTTTTCCTCCGCACTT
GATACTGAGCTAGTCCCCCTTGGCACCTTCCGTGCTGGTTTTACAGGGATTGAAAGGACT
CTGACAGCTTGGTTTGAACTCTTTGTGGTACCAGCATGTGTGCAACAAGGAGAAGTGATG
GCTGTGCGTTGAGTCCCCCGATGGTAATTGTGCCTCTCACAGGTGGACCGTTTGCTTTGT
GATTCGTGGTGCCCGTGTGGCCATCCGTGTCTGCACAAACCCGGGGTTTTGAGAACATGG
AGGTAAAATCTAAATGAGGCTGAGGAGTCCGGATCCCCCGTTTTCCGGCTCCTCAGGCTG
CCTGCCCTGGGGACACACGCCGACCTGTGCTCTGTCTCTGCAGTTCTGTACGGAGCTGAA
CCAGCCAATCCTGCCCAACATCCGCAAGTGGAAGGGGCCCCGAGGATGCTGGAAGGTCGT
GGTTTCCGAGACGCCCTCGACTCAGCTCCCGAAGGTAACCCTCAGCCGGGGGATGTGGAT
TTTCCTTTCCCCCAGTCGCAGACGCTTAATGTATTCCTTTGCCAGCATCCTTGATGTAAT
GCTGTATCGCTGCCCATTTTTTCGCTCTGTGCCTTTCATGTCAAAATACCCTGGTTCTCA
TTTCCTGTTTAGATCGGACACGGGCTGCCGCCCANG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAATTCTCTGGTTTATATGTTACGAAATGTTCACCAGGTCAATTCTAGTTACCATCTG
TCACCGTACAAAGTTATTTCACTATTACTGACTGTCTCTTGGGGGTCAGTTTTTTGCACG
TCTCTTGGAAGCGGTGGGAAGAACAGACACGGTGTTCTTCGCCTTTTTTCCTCCGCACTT
GATACTGAGCTAGTCCCCCTTGGCACCTTCCGTGCTGGTTTTACAGGGATTGAAAGGACT
CTGACAGCTTGGTTTGAACTCTTTGTGGTACCAGCATGTGTGCAACAAGGAGAAGTGATG
GCTGTGCGTTGAGTCCCCCGATGGTAATTGTGCCTCTCACAGGTGGACCGTTTGCTTTGT
GATTCGTGGTGCCCGTGTGGCCATCCGTGTCTGCACAAACCCGGGGTTTTGAGAACATGG
AGGTAAAATCTAAATGAGGCTGAGGAGTCCGGATCCCCCGTTTTCCGGCTCCTCAGGCTG
CCTGCCCTGGGGACACACGCCGACCTGTGCTCTGTCTCTGCAGTTCTGTACGGAGCTGAA
CCAGCCAATCCTGCCCAACATCCGCAAGTGGAAGGGGCCCCGAGGATGCTGGAAGGTCGT
GGTTTCCGAGACGCCCTCGACTCAGCTCCCGAAGGTAACCCTCAGCCGGGGGATGTGGAT
TTTCCTTTCCCCCAGTCGCAGACGCTTAATGTATTCCTTTGCCAGCATCCTTGATGTAAT
GCTGTATCGCTGCCCATTTTTTCGCTCTGTGCCTTTCATGTCAAAATACCCTGGTTCTCA
TTTCCTGTTTAGATCGGACACGGGCTGCCGCCCANG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               53-170, - strand, RNAz p=0.643258
               

               
               405-534, + strand, RNAz p=0.988464

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-170, - strand, RNAz p=0.643258
               

               
               405-534, + strand, RNAz p=0.988464

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               14-814, gnl|bosTau2|chr4 (34143719-34144541)
               

               
               14-814, gnl|Hg17|chr7 (36093515-36094275)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-814, gnl|bosTau2|chr4 (34143719-34144541)
               

               
               14-814, gnl|Hg17|chr7 (36093515-36094275)

	53-170, - strand, RNAz p=0.643258
	405-534, + strand, RNAz p=0.988464

	14-814, gnl\|bosTau2\|chr4 (34143719-34144541)
	14-814, gnl\|Hg17\|chr7 (36093515-36094275)