Ss1.1-Tra1-TCH01D120010.5
|
CTCTCCTCAGCCACCAAAGTTTTTCAAGCCCCTAATGCCGGTAAAAGAGGAGCATAAGAA
AAGGATGTCCCTGGAAGCAAAGCCTCTTCTAAGCCAGGAGAGCATGCCTCCACCTCAGGC
ACATAACCCTGGCTGCATTGTACCCTCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACA
CAATAGCAAACGTGAGAAGAAGATTGACTCTGAGGAGGAGGAAAACGATCTGGAGGCTCT
CAACAGGAAGCTGCTGAGTTCGCAGCCTTATGTCCCCGTGGAGTTTGCCGACTTCAGTGT
TTACAATGCCAGCTTGGAGAGCAGGGAGTGGTTTTCTTCTAAAGTCGATTTGACGAACTC
AAAGGTCCTGGAGAAGGATGTGTCCCGCAGCCCCACCACCAGCAGCATCACCAGCGGCTA
CTTTTCCCACAGTGCCTCCAACGCCACCCTGTCTGACATGGTGGTCCCTTCGAGCGACAG
CTCAGATCAGCTGGCCCTTCCGGCAAAGGACGCAGACGCCAGCGAGCATCCCGGACCATC
ATTTGTGCATGATTTCCGGCCATCCTCAAACAAAGAGTTGACAGAACTAGACAGAGGCTT
GGTGAAGGATAAGATGACGATGGTGCCACTCAAGGAAAACAGTGCCTTAGCCAAAGGGAG
CCCATCATCCCAAAGCACCCCCGAGAAAAACTCCACAGCTCTCTGTAGGACCGGCTCGTG
TTCAGGACAAGAGGCCTGCTCCGGTAGAAAGGGCCCGCCGGCCCGAGGATTCTGCCCCAG
GGAGGTGACCGTGGAACACACCACGGACATCCTTGAGGACCATTCTTTCACAGAGTTTAT
GGGCGTGTCCGATGGGAAGGATTTGGATGGTTTGACAGCTCCTTCTGCGGGAGAACTTTC
GAGCAGTCGGACCCTACCCAGTCCAACAGACAGTAAGAGGGCCCCATTTGGGCCCCAGGA
CCCTGGCCAGCCGCCTTCCTCGGCAGGGAATGACCAGGTAATAAATCCCAGGGGCAGCCC
TGTGGGTCCTGGGCTGTCCGTGGAGGCACCCAATTGTGCCCCGCCCCCTGGGGGCCCTTC
ATCCCGTGACTTAGGAAGGGCGATTCATTCAGATGTTCCCCACAGGGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCTCCTCAGCCACCAAAGTTTTTCAAGCCCCTAATGCCGGTAAAAGAGGAGCATAAGAA
AAGGATGTCCCTGGAAGCAAAGCCTCTTCTAAGCCAGGAGAGCATGCCTCCACCTCAGGC
ACATAACCCTGGCTGCATTGTACCCTCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACA
CAATAGCAAACGTGAGAAGAAGATTGACTCTGAGGAGGAGGAAAACGATCTGGAGGCTCT
CAACAGGAAGCTGCTGAGTTCGCAGCCTTATGTCCCCGTGGAGTTTGCCGACTTCAGTGT
TTACAATGCCAGCTTGGAGAGCAGGGAGTGGTTTTCTTCTAAAGTCGATTTGACGAACTC
AAAGGTCCTGGAGAAGGATGTGTCCCGCAGCCCCACCACCAGCAGCATCACCAGCGGCTA
CTTTTCCCACAGTGCCTCCAACGCCACCCTGTCTGACATGGTGGTCCCTTCGAGCGACAG
CTCAGATCAGCTGGCCCTTCCGGCAAAGGACGCAGACGCCAGCGAGCATCCCGGACCATC
ATTTGTGCATGATTTCCGGCCATCCTCAAACAAAGAGTTGACAGAACTAGACAGAGGCTT
GGTGAAGGATAAGATGACGATGGTGCCACTCAAGGAAAACAGTGCCTTAGCCAAAGGGAG
CCCATCATCCCAAAGCACCCCCGAGAAAAACTCCACAGCTCTCTGTAGGACCGGCTCGTG
TTCAGGACAAGAGGCCTGCTCCGGTAGAAAGGGCCCGCCGGCCCGAGGATTCTGCCCCAG
GGAGGTGACCGTGGAACACACCACGGACATCCTTGAGGACCATTCTTTCACAGAGTTTAT
GGGCGTGTCCGATGGGAAGGATTTGGATGGTTTGACAGCTCCTTCTGCGGGAGAACTTTC
GAGCAGTCGGACCCTACCCAGTCCAACAGACAGTAAGAGGGCCCCATTTGGGCCCCAGGA
CCCTGGCCAGCCGCCTTCCTCGGCAGGGAATGACCAGGTAATAAATCCCAGGGGCAGCCC
TGTGGGTCCTGGGCTGTCCGTGGAGGCACCCAATTGTGCCCCGCCCCCTGGGGGCCCTTC
ATCCCGTGACTTAGGAAGGGCGATTCATTCAGATGTTCCCCACAGGGA
|
|
gi|61888090|ref|XP_591959.1| |
Protein identifier
|
gi|61888090|ref|XP_591959.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
206-1127, gnl|bosTau2|chr23 (30112849-30113771) |
|
206-1127, gnl|canFam2|chr35 (19644783-19645469) |
|
206-1127, gnl|dasNov1|scaffold_2868 (93096-92448) |
|
206-1127, gnl|echTel1|scaffold_241686 (3288-2610) |
|
206-1127, gnl|galGal2|chr2 (60257577-60256908) |
|
206-1127, gnl|hg17|chr6 (17872158-17872833) |
|
206-1127, gnl|Hg17|chr6 (17873156-17872236) |
|
206-1127, gnl|loxAfr1|scaffold_185 (185556-184877) |
|
206-1127, gnl|mm7|chr13 (46233976-46234648) |
|
206-1127, gnl|Mm7|chr13 (46234971-46234048) |
|
206-1127, gnl|monDom2|scaffold_3 (106871460-106872150) |
|
206-1127, gnl|oryCun1|scaffold_172899 (57699-57024) |
|
206-1127, gnl|panTro1|chr5 (18242306-18242981) |
|
206-1127, gnl|rheMac2|chr4 (17810839-17811526) |
|
206-1127, gnl|rn3|chr17 (24005536-24004855) |
|
206-1127, gnl|xenTro1|scaffold_64 (815856-816466) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
206-1127, gnl|bosTau2|chr23 (30112849-30113771) |
|
206-1127, gnl|canFam2|chr35 (19644783-19645469) |
|
206-1127, gnl|dasNov1|scaffold_2868 (93096-92448) |
|
206-1127, gnl|echTel1|scaffold_241686 (3288-2610) |
|
206-1127, gnl|galGal2|chr2 (60257577-60256908) |
|
206-1127, gnl|hg17|chr6 (17872158-17872833) |
|
206-1127, gnl|Hg17|chr6 (17873156-17872236) |
|
206-1127, gnl|loxAfr1|scaffold_185 (185556-184877) |
|
206-1127, gnl|mm7|chr13 (46233976-46234648) |
|
206-1127, gnl|Mm7|chr13 (46234971-46234048) |
|
206-1127, gnl|monDom2|scaffold_3 (106871460-106872150) |
|
206-1127, gnl|oryCun1|scaffold_172899 (57699-57024) |
|
206-1127, gnl|panTro1|chr5 (18242306-18242981) |
|
206-1127, gnl|rheMac2|chr4 (17810839-17811526) |
|
206-1127, gnl|rn3|chr17 (24005536-24004855) |
|
206-1127, gnl|xenTro1|scaffold_64 (815856-816466) |
