Ss1.1-Tra1-TCH01E010075.5
|
AAAAGAGATATGGCTGTAAAATCATCAGATTGAACAAGTCATTACTGTTTTCCTTGTTAG
TGATGATGGTTGGTTTCCAGGGGTAACTTGATGCTCTGTGGTGCTGCTGATCTCCCCAGC
CCAGGTCACTTTATGGCATTCCTATGGAGTGAGTCTTGCCTTGTACTCAGAAACTCAGGA
TTCCTAATCAGCAGCATCTCAGACACTCCTTTTTGGCTGTGAGGCTGCTGGGCTCTCAAC
AAAACTCCTAAATAGGAATACATGCAAAACTTTCATGCCTCTGCTGTCAGCCAAAGACAG
CTCTAAGACATGGCTCTTTTCGTTCCCTGTGCAATAAAGGTATAATTGTTTTCTGTGCCA
GATGTCAGAGAGACTTGTACCAGGTCTTTCTCCATGTCTTTTTAAAAAATGAAAACCAAA
AAAACAAAACAACAACAACAACAACAAAAGCCTCAGAATGTCAGTAACAAAGGGATCGTA
ATTATCCTTTAGTGTCATGCATAAATTCATGTGTAATTTTTAGCAAATGGCAGTGTCCTG
GTGCTCAGGATATATGTTATGTGACAGTGTTTTCTTTAAAATGAAGTGGCAGGTAAACAG
GACAGCTGTTTCTTTGCATAATTATTTTTTCCTGAAGGGTCTCAGGCCTCCTGCAGTTGG
TACCAGACGAGTCCTTAATGTTGACATTCTGTCAGTGTAGCCTTTGGATAAGACCATTGA
GGGACTGTGTGCCGTTCCACTGGGGTCCCAAAGTGGCTGGTGGATAAAGAACAGGTTTGA
AACTGTAGTAGGTCTCTTAGGCTGCTGAAAGAATAATGGAGTTCACCCAAGAAAATTGCA
AAGGGAGCTGTCTCAGGCATCCTCTTTCACCCATCTGATGAGACTGCCAGTCTGGGACTT
CAAACAGCATGGGCCTGGCTGCAGAATCAGGAGTTTGGCCTCCCCACTCTGTATCCTGGC
AGGTGGACCCATAGCAAGGAGGCCCGTCCATGTATTTCAGGATTATGTCAGGGAGAAAGA
CAAGGATGCCACATACGGCATCAGCTTAGTAGGAGACTAAAGAGTGACCAGGAAATGCCC
AGAGGAGTCCAAGACAAACATCTGGAGAAGAAGTCTCAGAGAGAAGAATTTTGAATTCTG
AACCCCATAACAGCCTAAAGAGGTCCCATGAGGCCTTGAAAACCTGTTAGGCTGTGGAAA
TCCCAGCCCTTCTCCCCACCCTTGCCCTGATGGGCCAGCCTTTGTAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAGAGATATGGCTGTAAAATCATCAGATTGAACAAGTCATTACTGTTTTCCTTGTTAG
TGATGATGGTTGGTTTCCAGGGGTAACTTGATGCTCTGTGGTGCTGCTGATCTCCCCAGC
CCAGGTCACTTTATGGCATTCCTATGGAGTGAGTCTTGCCTTGTACTCAGAAACTCAGGA
TTCCTAATCAGCAGCATCTCAGACACTCCTTTTTGGCTGTGAGGCTGCTGGGCTCTCAAC
AAAACTCCTAAATAGGAATACATGCAAAACTTTCATGCCTCTGCTGTCAGCCAAAGACAG
CTCTAAGACATGGCTCTTTTCGTTCCCTGTGCAATAAAGGTATAATTGTTTTCTGTGCCA
GATGTCAGAGAGACTTGTACCAGGTCTTTCTCCATGTCTTTTTAAAAAATGAAAACCAAA
AAAACAAAACAACAACAACAACAACAAAAGCCTCAGAATGTCAGTAACAAAGGGATCGTA
ATTATCCTTTAGTGTCATGCATAAATTCATGTGTAATTTTTAGCAAATGGCAGTGTCCTG
GTGCTCAGGATATATGTTATGTGACAGTGTTTTCTTTAAAATGAAGTGGCAGGTAAACAG
GACAGCTGTTTCTTTGCATAATTATTTTTTCCTGAAGGGTCTCAGGCCTCCTGCAGTTGG
TACCAGACGAGTCCTTAATGTTGACATTCTGTCAGTGTAGCCTTTGGATAAGACCATTGA
GGGACTGTGTGCCGTTCCACTGGGGTCCCAAAGTGGCTGGTGGATAAAGAACAGGTTTGA
AACTGTAGTAGGTCTCTTAGGCTGCTGAAAGAATAATGGAGTTCACCCAAGAAAATTGCA
AAGGGAGCTGTCTCAGGCATCCTCTTTCACCCATCTGATGAGACTGCCAGTCTGGGACTT
CAAACAGCATGGGCCTGGCTGCAGAATCAGGAGTTTGGCCTCCCCACTCTGTATCCTGGC
AGGTGGACCCATAGCAAGGAGGCCCGTCCATGTATTTCAGGATTATGTCAGGGAGAAAGA
CAAGGATGCCACATACGGCATCAGCTTAGTAGGAGACTAAAGAGTGACCAGGAAATGCCC
AGAGGAGTCCAAGACAAACATCTGGAGAAGAAGTCTCAGAGAGAAGAATTTTGAATTCTG
AACCCCATAACAGCCTAAAGAGGTCCCATGAGGCCTTGAAAACCTGTTAGGCTGTGGAAA
TCCCAGCCCTTCTCCCCACCCTTGCCCTGATGGGCCAGCCTTTGTAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
680-796, + strand, RNAmicro p=0.999994 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
680-796, + strand, RNAmicro p=0.999994 |
|
6-858, gnl|bosTau2|chr28 (25872079-25872944) |
|
6-858, gnl|Hg17|chr10 (78625253-78624386) |
| |
|
937-1248, gnl|bosTau2|chr28 (25872983-25873310) |
|
937-1248, gnl|canFam2|chr4 (30354645-30355158) |
|
937-1248, gnl|dasNov1|scaffold_1476 (41328-41825) |
|
937-1248, gnl|echTel1|scaffold_298649 (39288-39796) |
|
937-1248, gnl|hg17|chr10 (78623778-78624323) |
|
937-1248, gnl|Hg17|chr10 (78624346-78623986) |
|
937-1248, gnl|loxAfr1|scaffold_95258 (989-1525) |
|
937-1248, gnl|mm7|chr14 (21260881-21261354) |
|
937-1248, gnl|oryCun1|scaffold_214659 (83726-84244) |
|
937-1248, gnl|panTro1|chr8 (79897248-79897793) |
|
937-1248, gnl|rheMac2|chr9 (59856240-59855694) |
|
937-1248, gnl|rn3|chr15 (643312-642898) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
6-858, gnl|bosTau2|chr28 (25872079-25872944) |
|
6-858, gnl|Hg17|chr10 (78625253-78624386) |
| |
|
937-1248, gnl|bosTau2|chr28 (25872983-25873310) |
|
937-1248, gnl|canFam2|chr4 (30354645-30355158) |
|
937-1248, gnl|dasNov1|scaffold_1476 (41328-41825) |
|
937-1248, gnl|echTel1|scaffold_298649 (39288-39796) |
|
937-1248, gnl|hg17|chr10 (78623778-78624323) |
|
937-1248, gnl|Hg17|chr10 (78624346-78623986) |
|
937-1248, gnl|loxAfr1|scaffold_95258 (989-1525) |
|
937-1248, gnl|mm7|chr14 (21260881-21261354) |
|
937-1248, gnl|oryCun1|scaffold_214659 (83726-84244) |
|
937-1248, gnl|panTro1|chr8 (79897248-79897793) |
|
937-1248, gnl|rheMac2|chr9 (59856240-59855694) |
|
937-1248, gnl|rn3|chr15 (643312-642898) |
