Non-Coding RNA Search

Ss1.1-Tra1-TCH01E010088.5

Sequence:


               
               CAGGCGCATTGTTTCACCATGTGGGCTCGGCGGTCTTCGGGCCCAGCTGAACGGTGACAC
GTAGCACCCTAGGCTACAAGACCCTGCTGCCAGCTCTGCAGCCTCCACCGTCTTGGTATC
GCCCTCCTCTCTCGGTCTTCCCCGCCAGCGCACTTCGCCATGGGCAAGAGCCGGACGAAG
CGCTTCAAGCGCCCTCAGTTCTCCCCTACAGGCGACTGTCAGGCCGAGGCGGCGGCGGCG
AACGGGGTTGAGCCCGAGGAGGACGACGGGCCGGCAGCAGAGCTGCTAGAAAAGCTCCAG
CACCCGAGCGCTGAGGTCCGCGAGTGCGCCTGCGCCGGGCTGGCCCGGCTGGTGCAGCAG
CGGCCGGCGCTCCCCGGCCTGGCTCGACGGGACGCCGTGCGCCGCGTCGGGCCGCTGCTG
CTTGACCCCAGCCTGGCGGTAAGGGAGACGGCTGCCGGCGCGCTGAGGTGAGCCGGGAGG
GGGTCCAGGGTGGTGACTCGGATCTGGACGGCACAGCGTCCAGTCGGCGCTTCCTGAGGG
CCACGCACCGTCGCTGATCGGTTTCAACCTCAGTGCACTGTCTGCGGCAGCTCGGGAGGG
CCAAGAACTGCCCAGGCTCTCCTGTTTGCAGAGGAGGGATTTGAACTCGGACTCCAAGGG
ACCCCGTGTCCCTCGGACCTCACACATTCCATCTGTCCATCTGGCTGCTTCACCTGCAGT
GGCCACCTGCCAAGCATCCTCTCCCGAAGGTCTAGCGCACGTTGTACCGTCTCCAGGAAC
CCTCCATGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCGCATTGTTTCACCATGTGGGCTCGGCGGTCTTCGGGCCCAGCTGAACGGTGACAC
GTAGCACCCTAGGCTACAAGACCCTGCTGCCAGCTCTGCAGCCTCCACCGTCTTGGTATC
GCCCTCCTCTCTCGGTCTTCCCCGCCAGCGCACTTCGCCATGGGCAAGAGCCGGACGAAG
CGCTTCAAGCGCCCTCAGTTCTCCCCTACAGGCGACTGTCAGGCCGAGGCGGCGGCGGCG
AACGGGGTTGAGCCCGAGGAGGACGACGGGCCGGCAGCAGAGCTGCTAGAAAAGCTCCAG
CACCCGAGCGCTGAGGTCCGCGAGTGCGCCTGCGCCGGGCTGGCCCGGCTGGTGCAGCAG
CGGCCGGCGCTCCCCGGCCTGGCTCGACGGGACGCCGTGCGCCGCGTCGGGCCGCTGCTG
CTTGACCCCAGCCTGGCGGTAAGGGAGACGGCTGCCGGCGCGCTGAGGTGAGCCGGGAGG
GGGTCCAGGGTGGTGACTCGGATCTGGACGGCACAGCGTCCAGTCGGCGCTTCCTGAGGG
CCACGCACCGTCGCTGATCGGTTTCAACCTCAGTGCACTGTCTGCGGCAGCTCGGGAGGG
CCAAGAACTGCCCAGGCTCTCCTGTTTGCAGAGGAGGGATTTGAACTCGGACTCCAAGGG
ACCCCGTGTCCCTCGGACCTCACACATTCCATCTGTCCATCTGGCTGCTTCACCTGCAGT
GGCCACCTGCCAAGCATCCTCTCCCGAAGGTCTAGCGCACGTTGTACCGTCTCCAGGAAC
CCTCCATGGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61823511|ref|XP_602092.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823511|ref|XP_602092.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               490-605, - strand, RNAz p=0.592246

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               490-605, - strand, RNAz p=0.592246

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               293-792, gnl|bosTau2|chr18 (20155873-20156386)
               

               
               293-792, gnl|Hg17|chr16 (48657777-48658233)
               

               
               293-792, gnl|Mm7|chr8 (86730572-86730994)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               293-792, gnl|bosTau2|chr18 (20155873-20156386)
               

               
               293-792, gnl|Hg17|chr16 (48657777-48658233)
               

               
               293-792, gnl|Mm7|chr8 (86730572-86730994)

	293-792, gnl\|bosTau2\|chr18 (20155873-20156386)
	293-792, gnl\|Hg17\|chr16 (48657777-48658233)
	293-792, gnl\|Mm7\|chr8 (86730572-86730994)