Non-Coding RNA Search

Ss1.1-Tra1-TCH01E020060.5

Sequence:


               
               AGTAAGAGGCAAAGGGGAGAAGATGATGGAAAAGAGATACTTATAGGCGCCCAGCGAAAG
CAGTCACTTCTGTGAGGTGTAGAGTTCTCCCCCTGAGGTTGCCTCTTTGCCCCTTCATTG
GTGCCCTTCCTGTCAGTAGCATTTGGGAAACACACAAAGGAAAAGGGATTGAGAAGTAAT
AAGCTGCATTAAAATCATACAATCTTATTCTATCTTCCTGCAGCTTAGAGGACATTCCTC
TTTAAAAATAACATGAATAAATATCAAGTTGCTTTTCTTTATAAGGGACACACACACACA
CACACACACACACACACACACACACACACGCACACACACACACACACACACACACGGCGC
ATTCTTCATCCCTGGAAGTTTCCCAAATGAAATCTGCTGTCCTGAGGCTGCTTGCAGAAG
GCAATGAGAGCACGGCTCTCCTTGCCAGGCCTGAAGAGTTCTGGAGGCACCCAAAGCTGA
AAGCTTTCAGCAAAACACAGATGCAAGCAAATTGCAAAATCACAGTGTCTGCAGGACTGG
GTTGTGGTTGGCACAGGTTTGGAGATTTTTTCAAACACCTAGGGCAAAGGGGAACGGGCG
CCTCTCTCCCTCTTGGTCAGCCCTGTACTGCATTAGGGTTCACTTCTCTTAGGGTTTTCT
TGCTATACTTTCATCTAAATTCATGCTCTTTTCCCCCAACGGACATTCCAACAGACACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAAGAGGCAAAGGGGAGAAGATGATGGAAAAGAGATACTTATAGGCGCCCAGCGAAAG
CAGTCACTTCTGTGAGGTGTAGAGTTCTCCCCCTGAGGTTGCCTCTTTGCCCCTTCATTG
GTGCCCTTCCTGTCAGTAGCATTTGGGAAACACACAAAGGAAAAGGGATTGAGAAGTAAT
AAGCTGCATTAAAATCATACAATCTTATTCTATCTTCCTGCAGCTTAGAGGACATTCCTC
TTTAAAAATAACATGAATAAATATCAAGTTGCTTTTCTTTATAAGGGACACACACACACA
CACACACACACACACACACACACACACACGCACACACACACACACACACACACACGGCGC
ATTCTTCATCCCTGGAAGTTTCCCAAATGAAATCTGCTGTCCTGAGGCTGCTTGCAGAAG
GCAATGAGAGCACGGCTCTCCTTGCCAGGCCTGAAGAGTTCTGGAGGCACCCAAAGCTGA
AAGCTTTCAGCAAAACACAGATGCAAGCAAATTGCAAAATCACAGTGTCTGCAGGACTGG
GTTGTGGTTGGCACAGGTTTGGAGATTTTTTCAAACACCTAGGGCAAAGGGGAACGGGCG
CCTCTCTCCCTCTTGGTCAGCCCTGTACTGCATTAGGGTTCACTTCTCTTAGGGTTTTCT
TGCTATACTTTCATCTAAATTCATGCTCTTTTCCCCCAACGGACATTCCAACAGACACCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               159-251, - strand, RNAz p=0.982061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-251, - strand, RNAz p=0.982061

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-251, gnl|bosTau2|chr17 (12154799-12154551)
               

               
               1-251, gnl|Hg17|chr4 (141245950-141246225)
               


               
               350-718, gnl|bosTau2|chr17 (12154547-12154177)
               

               
               350-718, gnl|Hg17|chr4 (141246229-141246637)
               

               
               350-718, gnl|Mm7|chr3 (52064627-52064997)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-251, gnl|bosTau2|chr17 (12154799-12154551)
               

               
               1-251, gnl|Hg17|chr4 (141245950-141246225)
               


               
               350-718, gnl|bosTau2|chr17 (12154547-12154177)
               

               
               350-718, gnl|Hg17|chr4 (141246229-141246637)
               

               
               350-718, gnl|Mm7|chr3 (52064627-52064997)

	1-251, gnl\|bosTau2\|chr17 (12154799-12154551)
	1-251, gnl\|Hg17\|chr4 (141245950-141246225)

	350-718, gnl\|bosTau2\|chr17 (12154547-12154177)
	350-718, gnl\|Hg17\|chr4 (141246229-141246637)
	350-718, gnl\|Mm7\|chr3 (52064627-52064997)