Non-Coding RNA Search

Ss1.1-Tra1-TCH01E040005.5

Sequence:


               
               ATGCCTTCCTTCTAGAAAAGTATCACGCCTTCCCATGCTAGTGGGTTGTTTGATTTTTTT
TTTTTTAATTTTTCTTTTTTTCAGGACGAAAGGGGGCCGGGTAACTTGCCTTCTGTCACA
GAAACCTTTAGTTTCAGAGGCAGAGTCTCTCCCGGACAAATGGATTTCCTTGTTGGCTGT
CTCAGTAATGTTAGGAAGTCAAGGGACTCTGTGCTCTTGCTGCAGTTATTGGTTGCTTTC
TCCGGACGGACAGGCTTGTCTGGGGACCAGCTCGGCAGAGAGTTTCGAGTTACCAGATTT
AGGCAAGCCTCCCGAGGAGCCGGAGGACGAGCGGCAGCCCAGCCGCAGAGGCCAAAGCAG
CAGCGCCTTTAAGCCCTGCAAGCAGCTGCGGCTCTGATTGGCTGGCTGGTTCAGCTGCTT
CCCTGGAACAAAGGTCAAAGTGGACTGCGGTGTTAAAGTCAAGAGGCTGCGATCGAATCG
CACTGCTCAAGTTTGCAGGCTGAGAGCCGCAGGACGCTGGCTGACGGCAGCCCAAGTTGC
TTCCCCCCCCCGCGGCGGTGGCGGTGGCAGCGGCAGCGGTGAGGTGCCGCCTCACGCCCC
AAGCCCAGCTCAGCCACGGTGAGCCGCCGAGCAGCCGCTCACCCGTCCAGACCAACTTTG
GCGCGGAAGAGACAGTTGTGAGAGTCCCTTGCAAACTGCCAGACAAGGATGGCTTGCGAA
ATCATGCCTCTGCAAAGTTCACAGGAAGATGAAAGACCGATGTCACCTTTCTATTTGAGC
GCCCACGTATCTCAAGTCAGCAACGTGTCAACGACTGGAGAACTCTTAGAGAGAACCATC
CGCTCTGCTGTGGAACAGCATCTTTTTGATGTGAATAGTCCTGGAGGTCAAAGTTCAGAG
GACTCGGAATCTGGACCGTCAGCAGCATCTTCCTCCACGTCCGCCAAACAGCGACGGCGC
CAGTCCAAGGAGCAGGATGAAGTTCGACACAGCAGAGATATGGGACTTCTCAACAAAGAA
AATATTCCTTCTGGGCTCGGCAACCTTGATGAATGTATTCTGAATGCTCAGGAAGTGGGA
AAATTACATGAAAATACTTCCGGTTATATTGGAGAAAGAGGCAAACCTAAACGTCAGAAA
CCCAGTTCCACACTTACTGCGCTCAGTGAAAAGCAAGATGGTCTTCCGGTAAGTGAATGA
TCTTATAAAAGTTTTACTTGTAGCCTGTTAGGAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCTTCCTTCTAGAAAAGTATCACGCCTTCCCATGCTAGTGGGTTGTTTGATTTTTTT
TTTTTTAATTTTTCTTTTTTTCAGGACGAAAGGGGGCCGGGTAACTTGCCTTCTGTCACA
GAAACCTTTAGTTTCAGAGGCAGAGTCTCTCCCGGACAAATGGATTTCCTTGTTGGCTGT
CTCAGTAATGTTAGGAAGTCAAGGGACTCTGTGCTCTTGCTGCAGTTATTGGTTGCTTTC
TCCGGACGGACAGGCTTGTCTGGGGACCAGCTCGGCAGAGAGTTTCGAGTTACCAGATTT
AGGCAAGCCTCCCGAGGAGCCGGAGGACGAGCGGCAGCCCAGCCGCAGAGGCCAAAGCAG
CAGCGCCTTTAAGCCCTGCAAGCAGCTGCGGCTCTGATTGGCTGGCTGGTTCAGCTGCTT
CCCTGGAACAAAGGTCAAAGTGGACTGCGGTGTTAAAGTCAAGAGGCTGCGATCGAATCG
CACTGCTCAAGTTTGCAGGCTGAGAGCCGCAGGACGCTGGCTGACGGCAGCCCAAGTTGC
TTCCCCCCCCCGCGGCGGTGGCGGTGGCAGCGGCAGCGGTGAGGTGCCGCCTCACGCCCC
AAGCCCAGCTCAGCCACGGTGAGCCGCCGAGCAGCCGCTCACCCGTCCAGACCAACTTTG
GCGCGGAAGAGACAGTTGTGAGAGTCCCTTGCAAACTGCCAGACAAGGATGGCTTGCGAA
ATCATGCCTCTGCAAAGTTCACAGGAAGATGAAAGACCGATGTCACCTTTCTATTTGAGC
GCCCACGTATCTCAAGTCAGCAACGTGTCAACGACTGGAGAACTCTTAGAGAGAACCATC
CGCTCTGCTGTGGAACAGCATCTTTTTGATGTGAATAGTCCTGGAGGTCAAAGTTCAGAG
GACTCGGAATCTGGACCGTCAGCAGCATCTTCCTCCACGTCCGCCAAACAGCGACGGCGC
CAGTCCAAGGAGCAGGATGAAGTTCGACACAGCAGAGATATGGGACTTCTCAACAAAGAA
AATATTCCTTCTGGGCTCGGCAACCTTGATGAATGTATTCTGAATGCTCAGGAAGTGGGA
AAATTACATGAAAATACTTCCGGTTATATTGGAGAAAGAGGCAAACCTAAACGTCAGAAA
CCCAGTTCCACACTTACTGCGCTCAGTGAAAAGCAAGATGGTCTTCCGGTAAGTGAATGA
TCTTATAAAAGTTTTACTTGTAGCCTGTTAGGAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               234-325, - strand, RNAz p=0.822929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-325, - strand, RNAz p=0.822929

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-546, gnl|bosTau2|chr6 (16005041-16005568)
               

               
               2-546, gnl|Hg17|chr4 (90102046-90101462)
               

               
               2-546, gnl|Mm7|chr6 (58993463-58992947)
               


               
               823-1008, gnl|bosTau2|chr6 (19259425-19259607)
               

               
               823-1008, gnl|Hg17|chr4 (90066260-90066075)
               

               
               823-1008, gnl|Mm7|chr6 (58955854-58955672)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-546, gnl|bosTau2|chr6 (16005041-16005568)
               

               
               2-546, gnl|Hg17|chr4 (90102046-90101462)
               

               
               2-546, gnl|Mm7|chr6 (58993463-58992947)
               


               
               823-1008, gnl|bosTau2|chr6 (19259425-19259607)
               

               
               823-1008, gnl|Hg17|chr4 (90066260-90066075)
               

               
               823-1008, gnl|Mm7|chr6 (58955854-58955672)

	2-546, gnl\|bosTau2\|chr6 (16005041-16005568)
	2-546, gnl\|Hg17\|chr4 (90102046-90101462)
	2-546, gnl\|Mm7\|chr6 (58993463-58992947)

	823-1008, gnl\|bosTau2\|chr6 (19259425-19259607)
	823-1008, gnl\|Hg17\|chr4 (90066260-90066075)
	823-1008, gnl\|Mm7\|chr6 (58955854-58955672)