Non-Coding RNA Search

Ss1.1-Tra1-TCH01E040007.5

Sequence:


               
               GTCCCGTTTGCATTGCTATTAGGCAGTGCTGACTATCTGAGACCATGTTCCTTGAATTAT
TATTATTGACTAGAATACCAATTGTTCATTACACAAATCCTTTGCAGCTTCTTTGCACTA
TAAGGGAAGTGCCCATCACTAAAGTCCTTTACTTCGGAATATTAATGGATACAATCATTA
CTGGTCATGGTCCTGCCTACCAGATAAGACCCACCCATGCTCTTTTCATTGTTCTTAGGT
AGTGTGGACTACCTACCACCTTGCATTAATATTTAAAATCCTCATTGTCCATTGTCCCAC
TGTTAGCCTAGGATATCTCTTACCTCTATGCCATTTCTTCTAAGGAGTTCTGATTACCCT
AAGTCCTTTCTCTTAAACAATTTATGTGCATAATTGCATATACCTGTGGTCTCATGCAAT
TAAAAATTAAATCCTACACTCTGTGGAATATTGCTAGGTAGTGCAAATTATTCAAGGACT
CAGCTTTGGGACAGTTAATCCGCACAGTTGCGGTTGTCCAGAGTCCCATCCATTTTAGTG
GGCCACTGTGTCCCATTTGGGTGCTAGGTGTGTCAGGAGGACCCTTCTGTTGAATTGATA
ATGTGCATAATTGCATTTGTTCATGTCCTGTGAACTAGTAACATCCACCTGCTTTGTATT
CCAGCAGGGGACCCTTTTTAACTTAAGAGCGCTGCACTGGGACACTCTACCTGTGCAAAC
CTAATTGATTAGACCTGAGCCTTTTGTATTAGGAACCCTGCATTATCTTTACACCTAAAA
GGTGCTAATTGCCTAAGGCCATTTCCTGCCCGAACGACTGTGTTTAAACTAGAGTCTCAC
ACTCAATAACCGCCTTTGCATAAGAGTAGAGGATACTTGTGACAGTTAAGTGGTTTGATT
GCAGCTACAGACCCTGCTGTTAGACTAGCATCCATTCTCCTCCTAGATGATTCACATGAC
CACAATCCGTACTAGGGACTGTTAATGGGTTTAAATGCAGCTACAGTCCTTTATGTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCGTTTGCATTGCTATTAGGCAGTGCTGACTATCTGAGACCATGTTCCTTGAATTAT
TATTATTGACTAGAATACCAATTGTTCATTACACAAATCCTTTGCAGCTTCTTTGCACTA
TAAGGGAAGTGCCCATCACTAAAGTCCTTTACTTCGGAATATTAATGGATACAATCATTA
CTGGTCATGGTCCTGCCTACCAGATAAGACCCACCCATGCTCTTTTCATTGTTCTTAGGT
AGTGTGGACTACCTACCACCTTGCATTAATATTTAAAATCCTCATTGTCCATTGTCCCAC
TGTTAGCCTAGGATATCTCTTACCTCTATGCCATTTCTTCTAAGGAGTTCTGATTACCCT
AAGTCCTTTCTCTTAAACAATTTATGTGCATAATTGCATATACCTGTGGTCTCATGCAAT
TAAAAATTAAATCCTACACTCTGTGGAATATTGCTAGGTAGTGCAAATTATTCAAGGACT
CAGCTTTGGGACAGTTAATCCGCACAGTTGCGGTTGTCCAGAGTCCCATCCATTTTAGTG
GGCCACTGTGTCCCATTTGGGTGCTAGGTGTGTCAGGAGGACCCTTCTGTTGAATTGATA
ATGTGCATAATTGCATTTGTTCATGTCCTGTGAACTAGTAACATCCACCTGCTTTGTATT
CCAGCAGGGGACCCTTTTTAACTTAAGAGCGCTGCACTGGGACACTCTACCTGTGCAAAC
CTAATTGATTAGACCTGAGCCTTTTGTATTAGGAACCCTGCATTATCTTTACACCTAAAA
GGTGCTAATTGCCTAAGGCCATTTCCTGCCCGAACGACTGTGTTTAAACTAGAGTCTCAC
ACTCAATAACCGCCTTTGCATAAGAGTAGAGGATACTTGTGACAGTTAAGTGGTTTGATT
GCAGCTACAGACCCTGCTGTTAGACTAGCATCCATTCTCCTCCTAGATGATTCACATGAC
CACAATCCGTACTAGGGACTGTTAATGGGTTTAAATGCAGCTACAGTCCTTTATGTTAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               375-595, + strand, RNAz p=0.996456

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-595, + strand, RNAz p=0.996456

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-827, gnl|bosTau2|chr24 (6282555-6283380)
               

               
               2-827, gnl|Hg17|chrX (72851998-72851204)
               


               
               854-1019, gnl|bosTau2|chr24 (6283558-6283723)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-827, gnl|bosTau2|chr24 (6282555-6283380)
               

               
               2-827, gnl|Hg17|chrX (72851998-72851204)
               


               
               854-1019, gnl|bosTau2|chr24 (6283558-6283723)

	2-827, gnl\|bosTau2\|chr24 (6282555-6283380)
	2-827, gnl\|Hg17\|chrX (72851998-72851204)

	854-1019, gnl\|bosTau2\|chr24 (6283558-6283723)