Ss1.1-Tra1-TCH01E070038.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCTCNCAGCTGCTGTGCGCCGTTGCCGCGGGCCTTGCGCGGGCTGCGGGCGAGCCGGC CGCTGCGCAGTCTCCGCAGGCGCCGGCGGGAGGGGTCGAGGCGGAGGCGCGGCGCGGCGC AGGCTGCTCCAGGCCCAGTAAGCTGTGCTAGAACAAAAATGCAATGAAAGAAACACTGGA TGAATGAAAAGCCCTGCTTTGCAACCCCTCAGCATGGCAGGCCTGCAGCTCATGACCCCT GCTTCCTCACCAATGGGTCCTTTCTTTGGACTGCCATGGCAACAAGAAGCAATTCATGAT AACATTTATACGCCAAGAAAATATCAGGTTGAACTGCTTGAAGCAGCTCTGGATCATAAT ACCATAGTCTGTTTAAACACTGGCTCAGGGAAGACGTTTATTGCAGTACTACTCACTAAA GAGCTGTCCTATCAGATCAGGGGAGACTTCAACAGAAATGGCAAAAGGACGGTGTTCTTG GTCAACTCTGCAAACCAGGTTGCTCAACAGGTGTCAGCTGTCAGGACTCACTCGGATCTC AAGGTTGGGGAATACTCGAACCTAGAAGTAAATGCATCTTGGACAAAAGAGAAATGGAAC CAAGAGTTTACTAAGCACCAGGTTCTTGTTATGACTTGCTCTGTCGCCTTGAATGTTTTG AAAAATGGTTACTTAGCACTGTCAGACATTAACCTTTTGGTGTTCGATGAGTGTCATCTT GCAATCCTAGATCACCCCTACCGAGAGATTATGAAGCTCTGTGAAAATTGTCCATCATGT CCTCGTATTTTGGGGCTAACTGCTTCCATTTTAAATGGGAAATGTGATCCAGAGGAATTG GAAGAAAAGATACAGAAACTGGAGAAATTCTTTAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCTCNCAGCTGCTGTGCGCCGTTGCCGCGGGCCTTGCGCGGGCTGCGGGCGAGCCGGC CGCTGCGCAGTCTCCGCAGGCGCCGGCGGGAGGGGTCGAGGCGGAGGCGCGGCGCGGCGC AGGCTGCTCCAGGCCCAGTAAGCTGTGCTAGAACAAAAATGCAATGAAAGAAACACTGGA TGAATGAAAAGCCCTGCTTTGCAACCCCTCAGCATGGCAGGCCTGCAGCTCATGACCCCT GCTTCCTCACCAATGGGTCCTTTCTTTGGACTGCCATGGCAACAAGAAGCAATTCATGAT AACATTTATACGCCAAGAAAATATCAGGTTGAACTGCTTGAAGCAGCTCTGGATCATAAT ACCATAGTCTGTTTAAACACTGGCTCAGGGAAGACGTTTATTGCAGTACTACTCACTAAA GAGCTGTCCTATCAGATCAGGGGAGACTTCAACAGAAATGGCAAAAGGACGGTGTTCTTG GTCAACTCTGCAAACCAGGTTGCTCAACAGGTGTCAGCTGTCAGGACTCACTCGGATCTC AAGGTTGGGGAATACTCGAACCTAGAAGTAAATGCATCTTGGACAAAAGAGAAATGGAAC CAAGAGTTTACTAAGCACCAGGTTCTTGTTATGACTTGCTCTGTCGCCTTGAATGTTTTG AAAAATGGTTACTTAGCACTGTCAGACATTAACCTTTTGGTGTTCGATGAGTGTCATCTT GCAATCCTAGATCACCCCTACCGAGAGATTATGAAGCTCTGTGAAAATTGTCCATCATGT CCTCGTATTTTGGGGCTAACTGCTTCCATTTTAAATGGGAAATGTGATCCAGAGGAATTG GAAGAAAAGATACAGAAACTGGAGAAATTCTTTAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 211-329, + strand, RNAz p=0.847015 | |
| 212-329, - strand, RNAz p=0.875203 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 211-329, + strand, RNAz p=0.847015 | |
| 212-329, - strand, RNAz p=0.875203 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 137-329, gnl|bosTau2|chr21 (39965125-39965317) | |
| 137-329, gnl|canFam2|chr8 (67055022-67055151) | |
| 137-329, gnl|danRer3|chr17 (20879204-20879085) | |
| 137-329, gnl|dasNov1|scaffold_94806 (2983-3112) | |
| 137-329, gnl|echTel1|scaffold_197132 (5257-5128) | |
| 137-329, gnl|fr1|chrUn (24851348-24851219) | |
| 137-329, gnl|galGal2|chr5 (42673532-42673661) | |
| 137-329, gnl|hg17|chr14 (94669393-94669522) | |
| 137-329, gnl|Hg17|chr14 (94669595-94669403) | |
| 137-329, gnl|loxAfr1|scaffold_856 (44528-44399) | |
| 137-329, gnl|mm7|chr12 (102226110-102226239) | |
| 137-329, gnl|Mm7|chr12 (102226311-102226120) | |
| 137-329, gnl|monDom2|scaffold_6 (73070014-73070143) | |
| 137-329, gnl|oryCun1|scaffold_213205 (62536-62407) | |
| 137-329, gnl|panTro1|chr15 (95108314-95108443) | |
| 137-329, gnl|rheMac2|chr7 (158372756-158372885) | |
| 137-329, gnl|rn3|chr6 (128823337-128823466) | |
| 137-329, gnl|tetNig1|chrUn_random (116367366-116367247) | |
| 137-329, gnl|xenTro1|scaffold_144 (1688139-1688013) | |
| 620-756, gnl|bosTau2|chr21 (39968902-39969038) | |
| 620-756, gnl|Hg17|chr14 (94666284-94666148) | |
| 620-756, gnl|Mm7|chr12 (102223586-102223450) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-329, gnl|bosTau2|chr21 (39965125-39965317) | |
| 137-329, gnl|canFam2|chr8 (67055022-67055151) | |
| 137-329, gnl|danRer3|chr17 (20879204-20879085) | |
| 137-329, gnl|dasNov1|scaffold_94806 (2983-3112) | |
| 137-329, gnl|echTel1|scaffold_197132 (5257-5128) | |
| 137-329, gnl|fr1|chrUn (24851348-24851219) | |
| 137-329, gnl|galGal2|chr5 (42673532-42673661) | |
| 137-329, gnl|hg17|chr14 (94669393-94669522) | |
| 137-329, gnl|Hg17|chr14 (94669595-94669403) | |
| 137-329, gnl|loxAfr1|scaffold_856 (44528-44399) | |
| 137-329, gnl|mm7|chr12 (102226110-102226239) | |
| 137-329, gnl|Mm7|chr12 (102226311-102226120) | |
| 137-329, gnl|monDom2|scaffold_6 (73070014-73070143) | |
| 137-329, gnl|oryCun1|scaffold_213205 (62536-62407) | |
| 137-329, gnl|panTro1|chr15 (95108314-95108443) | |
| 137-329, gnl|rheMac2|chr7 (158372756-158372885) | |
| 137-329, gnl|rn3|chr6 (128823337-128823466) | |
| 137-329, gnl|tetNig1|chrUn_random (116367366-116367247) | |
| 137-329, gnl|xenTro1|scaffold_144 (1688139-1688013) | |
| 620-756, gnl|bosTau2|chr21 (39968902-39969038) | |
| 620-756, gnl|Hg17|chr14 (94666284-94666148) | |
| 620-756, gnl|Mm7|chr12 (102223586-102223450) |