Non-Coding RNA Search

Ss1.1-Tra1-TCH01E090003.5

Sequence:


               
               ATGTTGGCGGGTGACCCCAGGAGAGGTACCGGGCGAGAGGCGAGTCTCGAGGAGTGGTAG
CGCGCGCGCGGCCCGCAGCCTGACGCCCAGCCCCTGTCAGTCCCCCATGGCCTCATGGAG
CCGAGAGGCGGTGCTGAGTCTCTACCGGGCTCTGCTGCGCCAGGGCCGGCAGCTTCGCTA
CACTGATCGAGACTTCTACCTTGCCTCCATCCGCCGAGAGTTCCGGAAAAATCAGAAGCT
AGAGGACCCTGAGGCCCGGGAGAGGCAGCTGGAAAAGGGCCTGGTCTTCCTCCACAGCAA
ACTGGGAGGGCTTGTTTAGGAGTTTCCCTCTTCCCTTCCCATCCTAATTCCAAGGGAAAG
AGGACAAAGGTGCCTTCCATAGACTCGCTGCCTCTCCCCACCTCCACCTCCCAGATGCAG
TAAGAAGCCTCAGGTGAGCAATGGCAGGCGCTGGTGAGCGCAAAAGCAAGAAGGATGACA
ATGGCATCGGCACGGCCATTGATTTTGTCCTCTCCAATGCCCGGCTGGTGCTGGGGGTGG
GTGGAGCAGCCATGCTGGGCATTGCTACACTGGCGGTTAAGCGGATGTATGACAGGGCGA
TCAGCGCCCCTACCAGCCCCACGCGCCTGAGCCATTCTGGGAAAAGGAGCTGGGAAGAAC
CAAACTGGATGGGCTCCCCACGTCTGCTCAACAAGGACATGAAGACAGGCCTGAGCAGGT
CCCTGCAGACCCTCCCCACAGGCTCCTCGGCCTTTGACACAGATACGTTCTGCCCGCCCC
GGCCCAAGCCATTGGCCAGGAAGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGT
CCCTGCAGGAGAAACTTCTCACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTGGCGGGTGACCCCAGGAGAGGTACCGGGCGAGAGGCGAGTCTCGAGGAGTGGTAG
CGCGCGCGCGGCCCGCAGCCTGACGCCCAGCCCCTGTCAGTCCCCCATGGCCTCATGGAG
CCGAGAGGCGGTGCTGAGTCTCTACCGGGCTCTGCTGCGCCAGGGCCGGCAGCTTCGCTA
CACTGATCGAGACTTCTACCTTGCCTCCATCCGCCGAGAGTTCCGGAAAAATCAGAAGCT
AGAGGACCCTGAGGCCCGGGAGAGGCAGCTGGAAAAGGGCCTGGTCTTCCTCCACAGCAA
ACTGGGAGGGCTTGTTTAGGAGTTTCCCTCTTCCCTTCCCATCCTAATTCCAAGGGAAAG
AGGACAAAGGTGCCTTCCATAGACTCGCTGCCTCTCCCCACCTCCACCTCCCAGATGCAG
TAAGAAGCCTCAGGTGAGCAATGGCAGGCGCTGGTGAGCGCAAAAGCAAGAAGGATGACA
ATGGCATCGGCACGGCCATTGATTTTGTCCTCTCCAATGCCCGGCTGGTGCTGGGGGTGG
GTGGAGCAGCCATGCTGGGCATTGCTACACTGGCGGTTAAGCGGATGTATGACAGGGCGA
TCAGCGCCCCTACCAGCCCCACGCGCCTGAGCCATTCTGGGAAAAGGAGCTGGGAAGAAC
CAAACTGGATGGGCTCCCCACGTCTGCTCAACAAGGACATGAAGACAGGCCTGAGCAGGT
CCCTGCAGACCCTCCCCACAGGCTCCTCGGCCTTTGACACAGATACGTTCTGCCCGCCCC
GGCCCAAGCCATTGGCCAGGAAGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGT
CCCTGCAGGAGAAACTTCTCACTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50949569|emb|CAD38892.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50949569|emb|CAD38892.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-433, - strand, RNAz p=0.950797

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-433, - strand, RNAz p=0.950797

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               77-435, gnl|bosTau2|chr5 (69948698-69949058)
               

               
               77-435, gnl|Hg17|chr22 (38224706-38225041)
               

               
               77-435, gnl|Mm7|chr15 (80320286-80320636)
               


               
               584-762, gnl|bosTau2|chr5 (27588-27410)
               

               
               584-762, gnl|Hg17|chr22 (38232353-38232531)
               

               
               584-762, gnl|Mm7|chr15 (80332354-80332532)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-435, gnl|bosTau2|chr5 (69948698-69949058)
               

               
               77-435, gnl|Hg17|chr22 (38224706-38225041)
               

               
               77-435, gnl|Mm7|chr15 (80320286-80320636)
               


               
               584-762, gnl|bosTau2|chr5 (27588-27410)
               

               
               584-762, gnl|Hg17|chr22 (38232353-38232531)
               

               
               584-762, gnl|Mm7|chr15 (80332354-80332532)

	77-435, gnl\|bosTau2\|chr5 (69948698-69949058)
	77-435, gnl\|Hg17\|chr22 (38224706-38225041)
	77-435, gnl\|Mm7\|chr15 (80320286-80320636)

	584-762, gnl\|bosTau2\|chr5 (27588-27410)
	584-762, gnl\|Hg17\|chr22 (38232353-38232531)
	584-762, gnl\|Mm7\|chr15 (80332354-80332532)