Non-Coding RNA Search

Ss1.1-Tra1-TCH01E120078.5

Sequence:


               
               TCCTGGGAATTTTATCCTGTGTTTGACAAACAGTAATACAACTCCTGGGTTAAGCTACTT
GCTCTGGAGAAATTTTATGGTAAAAATGTTAATAAGAAAAGGAGAGTTAGATATCCAAAA
TGCCGTAGCATCATCCTTTGGTGTTTAGATAATAGATAGCTGTAATTTTCTTGCTCTATA
TGTTTTCTCTCTTTTCCACAATGAGTATGTACTACTTAGATGGTAAGAAAAAGCAAACTC
TTATAAGGGGACATATCTCCTCTCAAGATATGATTTGGCTCGAATATGGGTCAGAGACAT
ACAATAAGAGAATCCTAAGTCCCTCTTTCAATTCAGGAACAGCAAACTCAGGAATGAAAT
AGATTCATTCATATAGTGAATAAAGTGAAGGATGCTTGTATGCCAGATTAGCAAGTGAGA
ATGTCCTAGAAATGGTGCTTATTTATAGTGTGCTGATCACATATGATAATGAAGATACAA
AGAGGTGTAAAGTGCTTCCCACCACACTTTACCCACAGTAAGAACTTAGTGAAGGGGCCA
TTTATTATGATGCTATTATGCTAAAATGCATGGTCAATGCCTAAGAAAATTATTTTGTAT
CCCCTGCTAGAGGGAGGAAGTTCCCAGCCTTGGCCAAGGGAAGAAGCATCCAGTGTCTGT
ATTTTCTTACAAGTTCTATGAGTGATTCTCATGTGCCATCACACTGATATCCCTGTACGA
GTATCATAACCCAATAGAAAACCCAAAAGGCTAAGGACAAGGATGACTAGACCACAACCC
AAGATTTCCTGCTTCAGATGAGTGGTTCAACTCAGACTGAAGAGGAGGCTGAGATTCTGC
AGCTCAGCAAAGCAAGCTAGTCAGGACTTCTCATATGACCTAATGTGATTGGTGGCGGGA
GGCAGTCAGTACAAGGAAGAAGCGCCAGATGGTTAGTCATTCAAGTGGCAGCCAGGACAG
AAGCTTCATCATGATTTGGATAAATTAGAGTCCCTCATAGTAAAAGACCTGTTTCTCTGG
GGTCTGGAGAGAATTCCACAAGAGGCTCAGGCTGGAAGTGTGAGGCAGACTGAAGAGTAA
ACCAGTAGGAACCAGTGATCTTGAGTTTGGGTGTCATGAAGGGTGATGGACCTGTGTGGT
CCTCGGTGCCATCTACATCACAAGGCCCCTGGAATGTCTATAAAACTGCAGATTCCCAGC
CAAACCTCAGACTTGGCCTGACTACAGAGCTCCAAGCTCTGGCCTATGAAGTAGCCCCGG
CAACCAGCGTTCCATGTCGTCCTTATAAATGCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGGGAATTTTATCCTGTGTTTGACAAACAGTAATACAACTCCTGGGTTAAGCTACTT
GCTCTGGAGAAATTTTATGGTAAAAATGTTAATAAGAAAAGGAGAGTTAGATATCCAAAA
TGCCGTAGCATCATCCTTTGGTGTTTAGATAATAGATAGCTGTAATTTTCTTGCTCTATA
TGTTTTCTCTCTTTTCCACAATGAGTATGTACTACTTAGATGGTAAGAAAAAGCAAACTC
TTATAAGGGGACATATCTCCTCTCAAGATATGATTTGGCTCGAATATGGGTCAGAGACAT
ACAATAAGAGAATCCTAAGTCCCTCTTTCAATTCAGGAACAGCAAACTCAGGAATGAAAT
AGATTCATTCATATAGTGAATAAAGTGAAGGATGCTTGTATGCCAGATTAGCAAGTGAGA
ATGTCCTAGAAATGGTGCTTATTTATAGTGTGCTGATCACATATGATAATGAAGATACAA
AGAGGTGTAAAGTGCTTCCCACCACACTTTACCCACAGTAAGAACTTAGTGAAGGGGCCA
TTTATTATGATGCTATTATGCTAAAATGCATGGTCAATGCCTAAGAAAATTATTTTGTAT
CCCCTGCTAGAGGGAGGAAGTTCCCAGCCTTGGCCAAGGGAAGAAGCATCCAGTGTCTGT
ATTTTCTTACAAGTTCTATGAGTGATTCTCATGTGCCATCACACTGATATCCCTGTACGA
GTATCATAACCCAATAGAAAACCCAAAAGGCTAAGGACAAGGATGACTAGACCACAACCC
AAGATTTCCTGCTTCAGATGAGTGGTTCAACTCAGACTGAAGAGGAGGCTGAGATTCTGC
AGCTCAGCAAAGCAAGCTAGTCAGGACTTCTCATATGACCTAATGTGATTGGTGGCGGGA
GGCAGTCAGTACAAGGAAGAAGCGCCAGATGGTTAGTCATTCAAGTGGCAGCCAGGACAG
AAGCTTCATCATGATTTGGATAAATTAGAGTCCCTCATAGTAAAAGACCTGTTTCTCTGG
GGTCTGGAGAGAATTCCACAAGAGGCTCAGGCTGGAAGTGTGAGGCAGACTGAAGAGTAA
ACCAGTAGGAACCAGTGATCTTGAGTTTGGGTGTCATGAAGGGTGATGGACCTGTGTGGT
CCTCGGTGCCATCTACATCACAAGGCCCCTGGAATGTCTATAAAACTGCAGATTCCCAGC
CAAACCTCAGACTTGGCCTGACTACAGAGCTCCAAGCTCTGGCCTATGAAGTAGCCCCGG
CAACCAGCGTTCCATGTCGTCCTTATAAATGCTGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               766-882, - strand, RNAz p=0.953518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               766-882, - strand, RNAz p=0.953518

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1294, gnl|bosTau2|chr14 (33638959-33640290)
               

               
               1-1294, gnl|Hg17|chr12 (44086408-44087657)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1294, gnl|bosTau2|chr14 (33638959-33640290)
               

               
               1-1294, gnl|Hg17|chr12 (44086408-44087657)

	1-1294, gnl\|bosTau2\|chr14 (33638959-33640290)
	1-1294, gnl\|Hg17\|chr12 (44086408-44087657)