Non-Coding RNA Search

Ss1.1-Tra1-TCH01F030061.5

Sequence:


               
               AGACTTGGTGTTTTTGGCCCAGCAACGGGAGCATCATGGATACTGACTTATATGATGAGT
TTGGGAATTATATTGGACCAGAGCTTGATTCTGATGAAGATGATGATGAATTGGGCAGAG
AGACCAAAGATCTTGATGAGATGGACGACGAGGACGACGATGACGATGTAGGAGATCATG
ATGAAGAGCACCCTGGGATGGAGGTGGTGCTGCATGAGGACAAGAAGTACTACCCCACAG
CCGAGGAGGTGTACGGCCCCGAAGTGGAGACCATAGTTCAGGAGGAGGACACGCAGCCTC
TCACCGAACCCATTATTAAGCCAGTGAAAACCAAGAAATTCACTCTGATGGAGCAGACAC
TACCTGTCACAGTGTATGAAATGGATTTCTTGGCAGATCTGATGGATAACTCGGAGCTCA
TCAGAAACGTGACGCTCTGTGGCCATCTCCACCATGGCAAGACGTGTTTTGTAGATTGTT
TAATAGAGCAGACTCACCCGGAAATCAGAAAGCGCTATGACCAAGATCTGTGTTACACAG
ACATCCTCTTCACAGAGCAAGAGAGGGGTGTTGGCATCAAAAGTACTCCTGTGACAGTGG
TCTTGCCAGATACCAAAGGAAAATCCTATCTCTTCAATATCATGGACACTCCAGGGCATG
TGAATTTTTCTGATGAAGTCACAGCTGGCTTGCGCATCTCAGATGGAGTGGTCCTGTTCA
TTGATGCTGCCGAGGGCGTGATGCTGAACACAGAGCGGCTGATCAAGCACGCCGTGCAGG
AGAGGCTGGCGGTCACCGTGTGCATCAACAAGATTGACCGGCTAATCCTGGAGCTGAAGC
TGCCTCCCACTGACGCGTATTACAAGCTGCGTCACATCGTAGATGAGGTCAATGGATTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTTGGTGTTTTTGGCCCAGCAACGGGAGCATCATGGATACTGACTTATATGATGAGT
TTGGGAATTATATTGGACCAGAGCTTGATTCTGATGAAGATGATGATGAATTGGGCAGAG
AGACCAAAGATCTTGATGAGATGGACGACGAGGACGACGATGACGATGTAGGAGATCATG
ATGAAGAGCACCCTGGGATGGAGGTGGTGCTGCATGAGGACAAGAAGTACTACCCCACAG
CCGAGGAGGTGTACGGCCCCGAAGTGGAGACCATAGTTCAGGAGGAGGACACGCAGCCTC
TCACCGAACCCATTATTAAGCCAGTGAAAACCAAGAAATTCACTCTGATGGAGCAGACAC
TACCTGTCACAGTGTATGAAATGGATTTCTTGGCAGATCTGATGGATAACTCGGAGCTCA
TCAGAAACGTGACGCTCTGTGGCCATCTCCACCATGGCAAGACGTGTTTTGTAGATTGTT
TAATAGAGCAGACTCACCCGGAAATCAGAAAGCGCTATGACCAAGATCTGTGTTACACAG
ACATCCTCTTCACAGAGCAAGAGAGGGGTGTTGGCATCAAAAGTACTCCTGTGACAGTGG
TCTTGCCAGATACCAAAGGAAAATCCTATCTCTTCAATATCATGGACACTCCAGGGCATG
TGAATTTTTCTGATGAAGTCACAGCTGGCTTGCGCATCTCAGATGGAGTGGTCCTGTTCA
TTGATGCTGCCGAGGGCGTGATGCTGAACACAGAGCGGCTGATCAAGCACGCCGTGCAGG
AGAGGCTGGCGGTCACCGTGTGCATCAACAAGATTGACCGGCTAATCCTGGAGCTGAAGC
TGCCTCCCACTGACGCGTATTACAAGCTGCGTCACATCGTAGATGAGGTCAATGGATTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33416369|gb|AAH55550.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33416369|gb|AAH55550.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-297, + strand, RNAz p=0.525728

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-297, + strand, RNAz p=0.525728

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC002360, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC002360, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               139-304, gnl|bosTau2|chr19 (37421901-37422066)
               

               
               139-304, gnl|canFam2|chr9 (21914608-21914452)
               

               
               139-304, gnl|danRer3|chr3 (6047912-6047797)
               

               
               139-304, gnl|dasNov1|scaffold_146254 (1567-1411)
               

               
               139-304, gnl|echTel1|scaffold_217563 (8068-8225)
               

               
               139-304, gnl|galGal2|chr27 (1610204-1610083)
               

               
               139-304, gnl|hg17|chr17 (40319472-40319628)
               

               
               139-304, gnl|Hg17|chr17 (40319646-40319481)
               

               
               139-304, gnl|loxAfr1|scaffold_84049 (21776-21620)
               

               
               139-304, gnl|mm7|chr11 (102980054-102980210)
               

               
               139-304, gnl|Mm7|chr11 (102980228-102980063)
               

               
               139-304, gnl|monDom2|scaffold_18 (41709425-41709269)
               

               
               139-304, gnl|oryCun1|scaffold_201046 (156103-155947)
               

               
               139-304, gnl|panTro1|chr19 (43595044-43595200)
               

               
               139-304, gnl|rheMac2|chr16 (54983379-54983535)
               

               
               139-304, gnl|rn3|chr10 (92059986-92060142)
               

               
               139-304, gnl|tetNig1|chr3 (13089090-13088969)
               

               
               139-304, gnl|xenTro1|scaffold_316 (1339554-1339710)
               


               
               738-898, gnl|bosTau2|chr19 (37429810-37429970)
               

               
               738-898, gnl|Hg17|chr17 (40308994-40308834)
               

               
               738-898, gnl|Mm7|chr11 (102971818-102971658)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-304, gnl|bosTau2|chr19 (37421901-37422066)
               

               
               139-304, gnl|canFam2|chr9 (21914608-21914452)
               

               
               139-304, gnl|danRer3|chr3 (6047912-6047797)
               

               
               139-304, gnl|dasNov1|scaffold_146254 (1567-1411)
               

               
               139-304, gnl|echTel1|scaffold_217563 (8068-8225)
               

               
               139-304, gnl|galGal2|chr27 (1610204-1610083)
               

               
               139-304, gnl|hg17|chr17 (40319472-40319628)
               

               
               139-304, gnl|Hg17|chr17 (40319646-40319481)
               

               
               139-304, gnl|loxAfr1|scaffold_84049 (21776-21620)
               

               
               139-304, gnl|mm7|chr11 (102980054-102980210)
               

               
               139-304, gnl|Mm7|chr11 (102980228-102980063)
               

               
               139-304, gnl|monDom2|scaffold_18 (41709425-41709269)
               

               
               139-304, gnl|oryCun1|scaffold_201046 (156103-155947)
               

               
               139-304, gnl|panTro1|chr19 (43595044-43595200)
               

               
               139-304, gnl|rheMac2|chr16 (54983379-54983535)
               

               
               139-304, gnl|rn3|chr10 (92059986-92060142)
               

               
               139-304, gnl|tetNig1|chr3 (13089090-13088969)
               

               
               139-304, gnl|xenTro1|scaffold_316 (1339554-1339710)
               


               
               738-898, gnl|bosTau2|chr19 (37429810-37429970)
               

               
               738-898, gnl|Hg17|chr17 (40308994-40308834)
               

               
               738-898, gnl|Mm7|chr11 (102971818-102971658)

	139-304, gnl\|bosTau2\|chr19 (37421901-37422066)
	139-304, gnl\|canFam2\|chr9 (21914608-21914452)
	139-304, gnl\|danRer3\|chr3 (6047912-6047797)
	139-304, gnl\|dasNov1\|scaffold_146254 (1567-1411)
	139-304, gnl\|echTel1\|scaffold_217563 (8068-8225)
	139-304, gnl\|galGal2\|chr27 (1610204-1610083)
	139-304, gnl\|hg17\|chr17 (40319472-40319628)
	139-304, gnl\|Hg17\|chr17 (40319646-40319481)
	139-304, gnl\|loxAfr1\|scaffold_84049 (21776-21620)
	139-304, gnl\|mm7\|chr11 (102980054-102980210)
	139-304, gnl\|Mm7\|chr11 (102980228-102980063)
	139-304, gnl\|monDom2\|scaffold_18 (41709425-41709269)
	139-304, gnl\|oryCun1\|scaffold_201046 (156103-155947)
	139-304, gnl\|panTro1\|chr19 (43595044-43595200)
	139-304, gnl\|rheMac2\|chr16 (54983379-54983535)
	139-304, gnl\|rn3\|chr10 (92059986-92060142)
	139-304, gnl\|tetNig1\|chr3 (13089090-13088969)
	139-304, gnl\|xenTro1\|scaffold_316 (1339554-1339710)

	738-898, gnl\|bosTau2\|chr19 (37429810-37429970)
	738-898, gnl\|Hg17\|chr17 (40308994-40308834)
	738-898, gnl\|Mm7\|chr11 (102971818-102971658)