Ss1.1-Tra1-TCH01F050013.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTAGCTGCGGTTGGGGCTCGGGACCGGCTGCCATCTTAGTCGAGGGAGTGAAGAGTCGT CGCCGCCCCGAGTCCTGGTAACATGCATTTAGCAGTGGCCTTCTGGAGACAGCGCCTTAA CCCCAAGAAGTGACTCAAACGGTGAAAACTTCAGGTTTGCTGTTTTGGTGGTGGTATGAC TGACAGTCGATCACAGCTTGGTTCAATGGGTAGCCTGACCATGAAATCACAACTTCAGAT TACTGTCATTTCTGCAAAACTTAAAGAAAATAAAAAGAATTGGTTTGGACCAAGTCCTTA TGTGGAAGTCACAGTAGATGGACAGTCAAAGAAAACAGAAAAATGCAACAATACGAACAG TCCCAAATGGAAGCAACCTCTCACAGTTATCGTCACCCCTGTGAGTAAATTACATTTTCG TGTGTGGAGTCACCAAACGCTGAAATCTGATGTTTTGTTGGGAACGGCTGCATTAGATAT CTATGAAACATTGAAGTCAAATAATATGAAACTTGAGGAAGTAGTTGTCACTTTACAGCT TGTAGGTGACAAAGAACCAACAGAAACGATAGGAGATTTGTCAGTTTGCCTTGATGGGCT ACAGTTAGAGTCTGAAGTTGTTACTAATGGTGAAACTTCATGTTCAGAAAGTGCTTCGCA GAATGATGATGGCTCCAGACCCAAGGATGAAACAAGAGTGAACACAAATGGATCAGATGA CCTTGAGGATGCAGGGTCTAGCGACAGTAGGAGGGTCAATGGGAATAATTCTCCTTCACT CTCAAATGGCGGTTTTAAACCTTCTAGGCCTCCAAGACCTTCACGACCACCTCCACCTAC CCCACGTAGACCAGCATCTGTCAATGGCTCACCTTCTGCCACTTCTGAAAGTGATGGCTC TAGTACAGGCTCTCTGCCACCAACGAATACAAATTCAAATACATCTGAAGGAGCAACATC TGGATTAATAATTCCTCTTACTATTTCTGGAGGCTCAGGCCCTAGGCCATTAAATCCTGT ACCTCAAGCTCCCCTTCCACCTGGGTGAGTAATTGTTTTTGTTAACATTTGTTTTCTGGA GTTCCCATTATAGCTCAGTGGTAACAAGCCTGACTAGTATCTGTAAGGGTGCCAGTTCAA TCTCTGGCCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTAGCTGCGGTTGGGGCTCGGGACCGGCTGCCATCTTAGTCGAGGGAGTGAAGAGTCGT CGCCGCCCCGAGTCCTGGTAACATGCATTTAGCAGTGGCCTTCTGGAGACAGCGCCTTAA CCCCAAGAAGTGACTCAAACGGTGAAAACTTCAGGTTTGCTGTTTTGGTGGTGGTATGAC TGACAGTCGATCACAGCTTGGTTCAATGGGTAGCCTGACCATGAAATCACAACTTCAGAT TACTGTCATTTCTGCAAAACTTAAAGAAAATAAAAAGAATTGGTTTGGACCAAGTCCTTA TGTGGAAGTCACAGTAGATGGACAGTCAAAGAAAACAGAAAAATGCAACAATACGAACAG TCCCAAATGGAAGCAACCTCTCACAGTTATCGTCACCCCTGTGAGTAAATTACATTTTCG TGTGTGGAGTCACCAAACGCTGAAATCTGATGTTTTGTTGGGAACGGCTGCATTAGATAT CTATGAAACATTGAAGTCAAATAATATGAAACTTGAGGAAGTAGTTGTCACTTTACAGCT TGTAGGTGACAAAGAACCAACAGAAACGATAGGAGATTTGTCAGTTTGCCTTGATGGGCT ACAGTTAGAGTCTGAAGTTGTTACTAATGGTGAAACTTCATGTTCAGAAAGTGCTTCGCA GAATGATGATGGCTCCAGACCCAAGGATGAAACAAGAGTGAACACAAATGGATCAGATGA CCTTGAGGATGCAGGGTCTAGCGACAGTAGGAGGGTCAATGGGAATAATTCTCCTTCACT CTCAAATGGCGGTTTTAAACCTTCTAGGCCTCCAAGACCTTCACGACCACCTCCACCTAC CCCACGTAGACCAGCATCTGTCAATGGCTCACCTTCTGCCACTTCTGAAAGTGATGGCTC TAGTACAGGCTCTCTGCCACCAACGAATACAAATTCAAATACATCTGAAGGAGCAACATC TGGATTAATAATTCCTCTTACTATTTCTGGAGGCTCAGGCCCTAGGCCATTAAATCCTGT ACCTCAAGCTCCCCTTCCACCTGGGTGAGTAATTGTTTTTGTTAACATTTGTTTTCTGGA GTTCCCATTATAGCTCAGTGGTAACAAGCCTGACTAGTATCTGTAAGGGTGCCAGTTCAA TCTCTGGCCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 270-387, - strand, RNAz p=0.678948 | |
| 852-948, - strand, RNAz p=0.54669 | |
| 931-1044, - strand, RNAz p=0.686285 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 270-387, - strand, RNAz p=0.678948 | |
| 852-948, - strand, RNAz p=0.54669 | |
| 931-1044, - strand, RNAz p=0.686285 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 245-387, gnl|bosTau2|chr13 (47523234-47523092) | |
| 245-387, gnl|canFam2|chr24 (26513387-26513550) | |
| 245-387, gnl|danRer3|chr14 (37155173-37155012) | |
| 245-387, gnl|dasNov1|scaffold_42165 (6909-7069) | |
| 245-387, gnl|echTel1|scaffold_306931 (4340-4493) | |
| 245-387, gnl|fr1|chrUn (124325460-124325299) | |
| 245-387, gnl|galGal2|chr20 (1383644-1383484) | |
| 245-387, gnl|hg17|chr20 (32460109-32460272) | |
| 245-387, gnl|Hg17|chr20 (32460117-32460259) | |
| 245-387, gnl|loxAfr1|scaffold_58611 (6897-7060) | |
| 245-387, gnl|mm7|chr2 (154909535-154909689) | |
| 245-387, gnl|Mm7|chr2 (154909541-154909683) | |
| 245-387, gnl|monDom2|scaffold_6 (12557514-12557351) | |
| 245-387, gnl|panTro1|chr21 (34468033-34468196) | |
| 245-387, gnl|rheMac2|chr10 (30152760-30152597) | |
| 245-387, gnl|rn3|chr3 (145555912-145556065) | |
| 245-387, gnl|tetNig1|chr11 (7207163-7207002) | |
| 245-387, gnl|xenTro1|scaffold_35 (1414309-1414156) | |
| 388-512, gnl|bosTau2|chr13 (47519527-47519403) | |
| 388-512, gnl|Hg17|chr20 (32463982-32464106) | |
| 388-512, gnl|Mm7|chr2 (154913315-154913439) | |
| 513-652, gnl|bosTau2|chr13 (47517674-47517535) | |
| 513-652, gnl|canFam2|chr24 (26519236-26519418) | |
| 513-652, gnl|dasNov1|scaffold_42165 (12482-12658) | |
| 513-652, gnl|fr1|chrUn (124323148-124322960) | |
| 513-652, gnl|galGal2|chr20 (1380260-1380082) | |
| 513-652, gnl|hg17|chr20 (32465156-32465346) | |
| 513-652, gnl|Hg17|chr20 (32465209-32465348) | |
| 513-652, gnl|loxAfr1|scaffold_58611 (11085-11274) | |
| 513-652, gnl|mm7|chr2 (154914750-154914929) | |
| 513-652, gnl|Mm7|chr2 (154914792-154914931) | |
| 513-652, gnl|monDom2|scaffold_6 (12553939-12553725) | |
| 513-652, gnl|oryCun1|scaffold_295 (1311-1121) | |
| 513-652, gnl|panTro1|chr21 (34473084-34473274) | |
| 513-652, gnl|rheMac2|chr10 (30146836-30146643) | |
| 513-652, gnl|rn3|chr3 (145559568-145559747) | |
| 513-652, gnl|xenTro1|scaffold_35 (1412345-1412171) | |
| 852-1070, gnl|bosTau2|chr13 (47506609-47506390) | |
| 852-1070, gnl|canFam2|chr24 (26545853-26546114) | |
| 852-1070, gnl|echTel1|scaffold_231757 (12955-12660) | |
| 852-1070, gnl|galGal2|chr20 (1373882-1373574) | |
| 852-1070, gnl|hg17|chr20 (32491581-32491846) | |
| 852-1070, gnl|Hg17|chr20 (32491618-32491840) | |
| 852-1070, gnl|loxAfr1|scaffold_15109 (1803-2072) | |
| 852-1070, gnl|mm7|chr2 (154922982-154923240) | |
| 852-1070, gnl|Mm7|chr2 (154923013-154923237) | |
| 852-1070, gnl|monDom2|scaffold_6 (12539820-12539510) | |
| 852-1070, gnl|oryCun1|scaffold_157873 (7611-7339) | |
| 852-1070, gnl|panTro1|chr21 (34499504-34499769) | |
| 852-1070, gnl|rheMac2|chr10 (30122563-30122298) | |
| 852-1070, gnl|rn3|chr3 (145571681-145571943) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 245-387, gnl|bosTau2|chr13 (47523234-47523092) | |
| 245-387, gnl|canFam2|chr24 (26513387-26513550) | |
| 245-387, gnl|danRer3|chr14 (37155173-37155012) | |
| 245-387, gnl|dasNov1|scaffold_42165 (6909-7069) | |
| 245-387, gnl|echTel1|scaffold_306931 (4340-4493) | |
| 245-387, gnl|fr1|chrUn (124325460-124325299) | |
| 245-387, gnl|galGal2|chr20 (1383644-1383484) | |
| 245-387, gnl|hg17|chr20 (32460109-32460272) | |
| 245-387, gnl|Hg17|chr20 (32460117-32460259) | |
| 245-387, gnl|loxAfr1|scaffold_58611 (6897-7060) | |
| 245-387, gnl|mm7|chr2 (154909535-154909689) | |
| 245-387, gnl|Mm7|chr2 (154909541-154909683) | |
| 245-387, gnl|monDom2|scaffold_6 (12557514-12557351) | |
| 245-387, gnl|panTro1|chr21 (34468033-34468196) | |
| 245-387, gnl|rheMac2|chr10 (30152760-30152597) | |
| 245-387, gnl|rn3|chr3 (145555912-145556065) | |
| 245-387, gnl|tetNig1|chr11 (7207163-7207002) | |
| 245-387, gnl|xenTro1|scaffold_35 (1414309-1414156) | |
| 388-512, gnl|bosTau2|chr13 (47519527-47519403) | |
| 388-512, gnl|Hg17|chr20 (32463982-32464106) | |
| 388-512, gnl|Mm7|chr2 (154913315-154913439) | |
| 513-652, gnl|bosTau2|chr13 (47517674-47517535) | |
| 513-652, gnl|canFam2|chr24 (26519236-26519418) | |
| 513-652, gnl|dasNov1|scaffold_42165 (12482-12658) | |
| 513-652, gnl|fr1|chrUn (124323148-124322960) | |
| 513-652, gnl|galGal2|chr20 (1380260-1380082) | |
| 513-652, gnl|hg17|chr20 (32465156-32465346) | |
| 513-652, gnl|Hg17|chr20 (32465209-32465348) | |
| 513-652, gnl|loxAfr1|scaffold_58611 (11085-11274) | |
| 513-652, gnl|mm7|chr2 (154914750-154914929) | |
| 513-652, gnl|Mm7|chr2 (154914792-154914931) | |
| 513-652, gnl|monDom2|scaffold_6 (12553939-12553725) | |
| 513-652, gnl|oryCun1|scaffold_295 (1311-1121) | |
| 513-652, gnl|panTro1|chr21 (34473084-34473274) | |
| 513-652, gnl|rheMac2|chr10 (30146836-30146643) | |
| 513-652, gnl|rn3|chr3 (145559568-145559747) | |
| 513-652, gnl|xenTro1|scaffold_35 (1412345-1412171) | |
| 852-1070, gnl|bosTau2|chr13 (47506609-47506390) | |
| 852-1070, gnl|canFam2|chr24 (26545853-26546114) | |
| 852-1070, gnl|echTel1|scaffold_231757 (12955-12660) | |
| 852-1070, gnl|galGal2|chr20 (1373882-1373574) | |
| 852-1070, gnl|hg17|chr20 (32491581-32491846) | |
| 852-1070, gnl|Hg17|chr20 (32491618-32491840) | |
| 852-1070, gnl|loxAfr1|scaffold_15109 (1803-2072) | |
| 852-1070, gnl|mm7|chr2 (154922982-154923240) | |
| 852-1070, gnl|Mm7|chr2 (154923013-154923237) | |
| 852-1070, gnl|monDom2|scaffold_6 (12539820-12539510) | |
| 852-1070, gnl|oryCun1|scaffold_157873 (7611-7339) | |
| 852-1070, gnl|panTro1|chr21 (34499504-34499769) | |
| 852-1070, gnl|rheMac2|chr10 (30122563-30122298) | |
| 852-1070, gnl|rn3|chr3 (145571681-145571943) |