Non-Coding RNA Search

Ss1.1-Tra1-TCH01F080068.5

Sequence:


               
               ACTAGACCATTGCTGCTGGACCATTGCTGCTGGACCTTTGCTGCTGGACCATTGGTGCTA
GCCTGCAGCTGCTGGATCATTGCGGCGAGCCTATAGCTGCTAGACCATTGCTGCTAGACT
ATTGCTGCTTGCTTTCATATTGTGCAGAAGTCTTATAGGTAAATGAAAATCTGGCTTAAA
CTTTGTGCCTTGGAATAAGGATGTCTCAGGACAAATATTTATTTGGAATTCCTGTTTCCT
TTTGAGCTGGGGCCTGGGGGGTAGGCAGAGGAGAGAGTGACTCTGGAGAGAAATATTAAC
CTTGCAAATGTGCACATTTTCAATTCACATCCTAGTGACAGGCTACAACTTGTAATCAGT
ATAAAATGATTTTCCGGGAGAGTAAATGCTTATTTTCACTGTCTTGATGTTGGCACTGGA
TTACTTGGTATTAATCCCAGGGTGACACAGTCACATTTGGAAGCCGTGAGATTTATTTGG
ATGTCTTGTGGGGCCAGGAGCAGCCTTCATTTTACATCCTTGATCTTGGAGAATTTAAAT
AATAGAGCTGCTTTTCTCTATACACCAGTGGTGTGAAAAGGAAGTTTTCCGCCCAGGAAA
AATTCCAAGAGCCATGCCAAGTGGAGAGAAGGGAGGCCAGGGATGTCACCCTGTTTTCAT
CATCAACCCATGCTCAGCAGAAAACAATAGGCACTTATTAAACCCCAACTGTGTGCCTTT
CACATGGCACCCGAGAGCACAAACTCTGAGCTGTACCCTCAGGCTTAGCTATATGTAGTA
CCAGCCTCATGTGCCCACACTGTGAGGCTATGTTTGGAATAACTCCTCAGACCAAATTTG
CCATTGTTTTCTTTTATCCATATCTTTTATCTAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAGACCATTGCTGCTGGACCATTGCTGCTGGACCTTTGCTGCTGGACCATTGGTGCTA
GCCTGCAGCTGCTGGATCATTGCGGCGAGCCTATAGCTGCTAGACCATTGCTGCTAGACT
ATTGCTGCTTGCTTTCATATTGTGCAGAAGTCTTATAGGTAAATGAAAATCTGGCTTAAA
CTTTGTGCCTTGGAATAAGGATGTCTCAGGACAAATATTTATTTGGAATTCCTGTTTCCT
TTTGAGCTGGGGCCTGGGGGGTAGGCAGAGGAGAGAGTGACTCTGGAGAGAAATATTAAC
CTTGCAAATGTGCACATTTTCAATTCACATCCTAGTGACAGGCTACAACTTGTAATCAGT
ATAAAATGATTTTCCGGGAGAGTAAATGCTTATTTTCACTGTCTTGATGTTGGCACTGGA
TTACTTGGTATTAATCCCAGGGTGACACAGTCACATTTGGAAGCCGTGAGATTTATTTGG
ATGTCTTGTGGGGCCAGGAGCAGCCTTCATTTTACATCCTTGATCTTGGAGAATTTAAAT
AATAGAGCTGCTTTTCTCTATACACCAGTGGTGTGAAAAGGAAGTTTTCCGCCCAGGAAA
AATTCCAAGAGCCATGCCAAGTGGAGAGAAGGGAGGCCAGGGATGTCACCCTGTTTTCAT
CATCAACCCATGCTCAGCAGAAAACAATAGGCACTTATTAAACCCCAACTGTGTGCCTTT
CACATGGCACCCGAGAGCACAAACTCTGAGCTGTACCCTCAGGCTTAGCTATATGTAGTA
CCAGCCTCATGTGCCCACACTGTGAGGCTATGTTTGGAATAACTCCTCAGACCAAATTTG
CCATTGTTTTCTTTTATCCATATCTTTTATCTAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-478, + strand, RNAz p=0.565264

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-478, + strand, RNAz p=0.565264

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               462-558, + strand, RNAmicro p=0.986175

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               462-558, + strand, RNAmicro p=0.986175

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               123-876, gnl|bosTau2|chr13 (62066951-62067714)
               

               
               123-876, gnl|Hg17|chr20 (51439874-51440827)
               

               
               123-876, gnl|Mm7|chr2 (169795687-169796427)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-876, gnl|bosTau2|chr13 (62066951-62067714)
               

               
               123-876, gnl|Hg17|chr20 (51439874-51440827)
               

               
               123-876, gnl|Mm7|chr2 (169795687-169796427)

	123-876, gnl\|bosTau2\|chr13 (62066951-62067714)
	123-876, gnl\|Hg17\|chr20 (51439874-51440827)
	123-876, gnl\|Mm7\|chr2 (169795687-169796427)