Non-Coding RNA Search

Ss1.1-Tra1-TCH01G020101.5

Sequence:


               
               GGCAAAGAATGCTAGTGTTCTTCAGTCAGATCTTCATGTTTAAACTTTTGTAGATTCCCC
AGTCATAGGCAGACTCATTCAAAAAGACATGCTAAAAAATTAAAACGTTTTAAGCATCAT
CCAGGGTGTGGAAGTTTCCGCATCTCTGTACCTTTCCATTAACTCCAAAAAACGAAGTGC
TGACATCAGGGATAAGGTCTTGATTTAAGTGCATAGCAACATAATGCACCCCCCCCGGGG
GGGGGTTCAGTTTCCGTGTGTTAAATCAAGTTCTCATCGGGTTGCAAATTTAAATCTTTT
GGAGATATCTCTTACAATGTGATTCCCTTTGAACTTCCGTCCATGCTTATTCAAATATGT
TCGGTATTTTCCTCCTTCTGTATTCATACAGTGGAGCTCAAAGTAGAAAATTCACAAGTG
CTTTCTCCTTGATGTGTTCAATAGGTACCCCTGCAGCAATTACCTACTGGGAAGTATAGG
AGGAACCAGCCTGTGAGAGCTGGGGCCTCCAGTAATATGATCCGTGGTTGTTGTGTGTGT
AAAGTGCTAACACTTTTGACAGCCACCATCCTAAAGGGGTGTAGCGAGTCATTGGAAATT
TGTACACAGACTGCCCTATCCATTACGCATTGCCCATATCATACCCATAATCTCCCAAGG
CAGATATGCTATTACACTCAGCGGGCCAAGGGCTGCCCGCGCTTCTATACACACAACTCC
CACTGACTCTGTGCCACCGATGCACTTCAATGGGGGTTGTCAGCAGCATAAATTTAGCCC
AGTCCAGTCACAACCACAGCGGGTGCAGCGAAACAGAGAGACCTGTCTGTGTGTTAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAAGAATGCTAGTGTTCTTCAGTCAGATCTTCATGTTTAAACTTTTGTAGATTCCCC
AGTCATAGGCAGACTCATTCAAAAAGACATGCTAAAAAATTAAAACGTTTTAAGCATCAT
CCAGGGTGTGGAAGTTTCCGCATCTCTGTACCTTTCCATTAACTCCAAAAAACGAAGTGC
TGACATCAGGGATAAGGTCTTGATTTAAGTGCATAGCAACATAATGCACCCCCCCCGGGG
GGGGGTTCAGTTTCCGTGTGTTAAATCAAGTTCTCATCGGGTTGCAAATTTAAATCTTTT
GGAGATATCTCTTACAATGTGATTCCCTTTGAACTTCCGTCCATGCTTATTCAAATATGT
TCGGTATTTTCCTCCTTCTGTATTCATACAGTGGAGCTCAAAGTAGAAAATTCACAAGTG
CTTTCTCCTTGATGTGTTCAATAGGTACCCCTGCAGCAATTACCTACTGGGAAGTATAGG
AGGAACCAGCCTGTGAGAGCTGGGGCCTCCAGTAATATGATCCGTGGTTGTTGTGTGTGT
AAAGTGCTAACACTTTTGACAGCCACCATCCTAAAGGGGTGTAGCGAGTCATTGGAAATT
TGTACACAGACTGCCCTATCCATTACGCATTGCCCATATCATACCCATAATCTCCCAAGG
CAGATATGCTATTACACTCAGCGGGCCAAGGGCTGCCCGCGCTTCTATACACACAACTCC
CACTGACTCTGTGCCACCGATGCACTTCAATGGGGGTTGTCAGCAGCATAAATTTAGCCC
AGTCCAGTCACAACCACAGCGGGTGCAGCGAAACAGAGAGACCTGTCTGTGTGTTAAAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               400-517, - strand, RNAz p=0.90191

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-517, - strand, RNAz p=0.90191

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-839, gnl|bosTau2|chr21 (5717964-5717127)
               

               
               5-839, gnl|Hg17|chr15 (94648656-94647827)
               

               
               5-839, gnl|Mm7|chr7 (66245842-66246662)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-839, gnl|bosTau2|chr21 (5717964-5717127)
               

               
               5-839, gnl|Hg17|chr15 (94648656-94647827)
               

               
               5-839, gnl|Mm7|chr7 (66245842-66246662)

	5-839, gnl\|bosTau2\|chr21 (5717964-5717127)
	5-839, gnl\|Hg17\|chr15 (94648656-94647827)
	5-839, gnl\|Mm7\|chr7 (66245842-66246662)