Ss1.1-Tra1-TCH01G050026.5
|
AAACACCAAAAAAAAAAAAAAAGTCCTATAGGGTAGGGAGTATATTAGTTCCCCCATTTT
ACTGATGAAGAAATTCTGGCTCAGAGGAGCTAAGGAGATTATCTGGTGCCAGCCAATCAT
GACAGGGCACCAGTACTTTTATGAAAATACTCAGCCCATAGAACCTAAGACCATGTCTCT
TACTTCAAATGTCAAAGACATAGCAGAGTGATTCAGAGCAGAGTTCTGGAAGGGTTCCAC
TCAGCAAGACCTGGGTGGAATCTGCTCTGCTTCTTACTGGCTCTGAGTTCCATTTATCTC
ATCTGTAACCTAGGAGACTCTGAGGATAAAACAAGACAGGTTTCAGGGAGCACTTCACAC
CAAGCCTGGCAAATATTCGATGCTCTAGCTTTACAGCTCCAGCTGAGGCCAGAGGACCTG
GGTGGTCCCAAAGGACCTCAAAGCCACCTTGAAGCCCCATTTCAAGGACAGAACGGAGTT
CCCATTGTGGCCCAGCGGAAATGAATCCGACTAGTATCCAGGAGGGTGGGGGTTCGATCT
CTGGCCTCGCTCGGTGGTTTAAGAATCCAGTGTTGCCATGGGCTATGGTGTAGGTGGCAG
ATGCGGCTCGGATCCTGGGTGGCTGTGGCTGTGGCATAGGCAGGTGGCTATAGCTTCGAT
TCAACCCCTAGCCTGGGAAATTTCATATGCTTTTTTAGGGCTGAGCCCTAAAAGAAGTGG
GGGGGCGGACAGAACATAGTGGAAGTTGATACGTCCCTAAGCCAAGCAGCATGACTTTAC
CACATAAACCCTTGAGGCTGCTCCAGCCAACAGGCCAAATGTCCTTTAGCTGCCGCCCAG
CCAGTGAAAGAAGGAACTGCAGAGCTGAGGAGGAAGACCAAATCAAGGGACACAGAGACA
TCTCTCTCGCTGTTTTATACAGAGACGGGGAATAACGTGGGTAAGTTGGAGGCTACACAA
GTGTCCAGACAGCCCCCTCGTCCTGTGGGACCTGGAAGGTCATTGGGCCCCGAGGGAAGG
GGACACTCCAGCTGTCACGGGTCCTGGGCAGCCATGCCCCGCCCCCACTCCCACCCCCCA
GCAGGCCTGTCCTCAAATCGCTCAGGTCTCCCAGCCCAGGGAAATGAGCTTGCAAAGTCT
TCGGCCTCAGCCATACACTGCAGTGTGGTCCCCAGCATAGAGGTCAATGGCATGGTGAGA
CACATTCAATGCACGCCCAGGGAACTCGAAGTGTACATCACATGCCTCGAGAGGGTGATG
CGACGCTACATCCAGAGGCTGCAGTGGCTGCTGTCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAACACCAAAAAAAAAAAAAAAGTCCTATAGGGTAGGGAGTATATTAGTTCCCCCATTTT
ACTGATGAAGAAATTCTGGCTCAGAGGAGCTAAGGAGATTATCTGGTGCCAGCCAATCAT
GACAGGGCACCAGTACTTTTATGAAAATACTCAGCCCATAGAACCTAAGACCATGTCTCT
TACTTCAAATGTCAAAGACATAGCAGAGTGATTCAGAGCAGAGTTCTGGAAGGGTTCCAC
TCAGCAAGACCTGGGTGGAATCTGCTCTGCTTCTTACTGGCTCTGAGTTCCATTTATCTC
ATCTGTAACCTAGGAGACTCTGAGGATAAAACAAGACAGGTTTCAGGGAGCACTTCACAC
CAAGCCTGGCAAATATTCGATGCTCTAGCTTTACAGCTCCAGCTGAGGCCAGAGGACCTG
GGTGGTCCCAAAGGACCTCAAAGCCACCTTGAAGCCCCATTTCAAGGACAGAACGGAGTT
CCCATTGTGGCCCAGCGGAAATGAATCCGACTAGTATCCAGGAGGGTGGGGGTTCGATCT
CTGGCCTCGCTCGGTGGTTTAAGAATCCAGTGTTGCCATGGGCTATGGTGTAGGTGGCAG
ATGCGGCTCGGATCCTGGGTGGCTGTGGCTGTGGCATAGGCAGGTGGCTATAGCTTCGAT
TCAACCCCTAGCCTGGGAAATTTCATATGCTTTTTTAGGGCTGAGCCCTAAAAGAAGTGG
GGGGGCGGACAGAACATAGTGGAAGTTGATACGTCCCTAAGCCAAGCAGCATGACTTTAC
CACATAAACCCTTGAGGCTGCTCCAGCCAACAGGCCAAATGTCCTTTAGCTGCCGCCCAG
CCAGTGAAAGAAGGAACTGCAGAGCTGAGGAGGAAGACCAAATCAAGGGACACAGAGACA
TCTCTCTCGCTGTTTTATACAGAGACGGGGAATAACGTGGGTAAGTTGGAGGCTACACAA
GTGTCCAGACAGCCCCCTCGTCCTGTGGGACCTGGAAGGTCATTGGGCCCCGAGGGAAGG
GGACACTCCAGCTGTCACGGGTCCTGGGCAGCCATGCCCCGCCCCCACTCCCACCCCCCA
GCAGGCCTGTCCTCAAATCGCTCAGGTCTCCCAGCCCAGGGAAATGAGCTTGCAAAGTCT
TCGGCCTCAGCCATACACTGCAGTGTGGTCCCCAGCATAGAGGTCAATGGCATGGTGAGA
CACATTCAATGCACGCCCAGGGAACTCGAAGTGTACATCACATGCCTCGAGAGGGTGATG
CGACGCTACATCCAGAGGCTGCAGTGGCTGCTGTCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
24-474, gnl|bosTau2|chr25 (17765726-17765279) |
|
24-474, gnl|Hg17|chr16 (22059860-22060310) |
|
24-474, gnl|Mm7|chr7 (116714195-116714573) |
| |
|
727-1031, gnl|bosTau2|chr25 (17765287-17764982) |
|
727-1031, gnl|Hg17|chr16 (22060302-22060615) |
|
727-1031, gnl|Mm7|chr7 (116714565-116714835) |
| |
|
1184-1295, gnl|bosTau2|chr25 (17762561-17762450) |
|
1184-1295, gnl|canFam2|chr6 (26511386-26511251) |
|
1184-1295, gnl|danRer3|chr7 (35068613-35068500) |
|
1184-1295, gnl|dasNov1|scaffold_9667 (86802-86937) |
|
1184-1295, gnl|echTel1|scaffold_324785 (167760-167888) |
|
1184-1295, gnl|galGal2|chr14 (10780288-10780412) |
|
1184-1295, gnl|hg17|chr16 (22065045-22065180) |
|
1184-1295, gnl|Hg17|chr16 (22065053-22065164) |
|
1184-1295, gnl|loxAfr1|scaffold_5031 (77323-77458) |
|
1184-1295, gnl|mm7|chr7 (116717852-116717986) |
|
1184-1295, gnl|Mm7|chr7 (116717859-116717970) |
|
1184-1295, gnl|monDom2|scaffold_19 (42588947-42589082) |
|
1184-1295, gnl|oryCun1|scaffold_205284 (57934-58069) |
|
1184-1295, gnl|panTro1|chr18_random (10228370-10228505) |
|
1184-1295, gnl|rheMac2|chr20 (20556483-20556618) |
|
1184-1295, gnl|rn3|chr1 (179785332-179785466) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
24-474, gnl|bosTau2|chr25 (17765726-17765279) |
|
24-474, gnl|Hg17|chr16 (22059860-22060310) |
|
24-474, gnl|Mm7|chr7 (116714195-116714573) |
| |
|
727-1031, gnl|bosTau2|chr25 (17765287-17764982) |
|
727-1031, gnl|Hg17|chr16 (22060302-22060615) |
|
727-1031, gnl|Mm7|chr7 (116714565-116714835) |
| |
|
1184-1295, gnl|bosTau2|chr25 (17762561-17762450) |
|
1184-1295, gnl|canFam2|chr6 (26511386-26511251) |
|
1184-1295, gnl|danRer3|chr7 (35068613-35068500) |
|
1184-1295, gnl|dasNov1|scaffold_9667 (86802-86937) |
|
1184-1295, gnl|echTel1|scaffold_324785 (167760-167888) |
|
1184-1295, gnl|galGal2|chr14 (10780288-10780412) |
|
1184-1295, gnl|hg17|chr16 (22065045-22065180) |
|
1184-1295, gnl|Hg17|chr16 (22065053-22065164) |
|
1184-1295, gnl|loxAfr1|scaffold_5031 (77323-77458) |
|
1184-1295, gnl|mm7|chr7 (116717852-116717986) |
|
1184-1295, gnl|Mm7|chr7 (116717859-116717970) |
|
1184-1295, gnl|monDom2|scaffold_19 (42588947-42589082) |
|
1184-1295, gnl|oryCun1|scaffold_205284 (57934-58069) |
|
1184-1295, gnl|panTro1|chr18_random (10228370-10228505) |
|
1184-1295, gnl|rheMac2|chr20 (20556483-20556618) |
|
1184-1295, gnl|rn3|chr1 (179785332-179785466) |
