Ss1.1-Tra1-TCH01G050099.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCGTCGAAGGGCAGGAAGAATGGACTGAAAGTCTCTGGAGCAGGCGCGGATCCCACCG GCCCAGGCTCCTAGGGAACCAGCCTCACTTAGCTTGAGCTTGTTTTATTTTTGTCGTCTT TTCTTTTTATCTCGTATGTTTTAAAAACCTCTTGGAATTTCTGGGCGATTTTGCAGTCAT GGAGGTAGCTCAGCCCAAGGACCTGGAGGAGGACTTTGGCCAGGCCAAGAAGAGACATGC AGAGCTGTGCAGGCAGAAACGGATCTTCAATGCCAGGAACAGGATCTTTGGGGGAGACAT AGACGCCTGGAACGTACAGGTTTGTGACCAGAAGATAAGAGAAGCAACGGAAAAAGCTAG ACAGGAAACATTTGCTGCTGAAATGAGGCAGAATGACAAAATCACATGCATATTAGAAGA CCGGGCAAGGAGAGACAGGAAAAATCTCTGTAAAGCTATCAATGACTTCCAGCAGAGCTT TCAGAAGCCAGAAACTCGCCGTGAATTTGACCTCTCTGACCCCCTTGCCCTTAAGAAAGA TCTTCCAGCCCGGCAGTCCGATAATGATGCTCGGAATACGGTGTCAGGAATGCAGAAATT CATGGGAGAGGATTTAAACATCCATCAGAGGAGGAAATTCCAAGAGGAACAAAACAGAGA ATGGTCCTTGCAACAGCAGAGGGAGTGGAAGATTGCCCGTGAGGACCAAAAACACGCCGA GGATCTCTACTTGGAGACCAGGCTGCAGTTTGATGAAACAGCCAAGCATTTACAGAATCT GGAAGGCACCACCAGAAAGGCGGTTTGTGCAGCTGTGAAAGAATTCAACAAGAACCAGGC CTTGGAGTCAGCGGAAAAGAAACGTCAAGAGAGAAAACAGGAACAAGAGGACAACTTGGC CGAGATCACCAACCTGCTGCGTGGGGACCTGCTGTCAGAGGACCCGCAGCAGGCAGCCAG TTCCTTCGGGCCCCATCGCGTGGTCCCCGACCGCTGGAAGGGCATGACCCAGGAGCAGCT GGAGCAGATCCGCCTGGTTCAGAAACAGCAAGTCCAGGAGAAGCTGAGGCTCCAGGAAGA GGAGCGCCAGCGGGACATGGACTGGGACCGGCAGAGGGTTCAGAAGGCTCGCGCCACCTT GCTGTCGGAGCGGCAGCTGCAGCGCCAGCAGCGTGCGCTGCGCAGAGCCCTGGACGGCAG CAACCTCAGCCTGGCCAAGGAGCAGCTTTTGCAGAAAAAATATATGAAGGAAATCTATAC AAATCAGCCCACTGAAGATTATTTCACACAATTTAATACAAGAAGTCGATAATGAAAAGG CCACCTGCCTTCCTGCTAAATTGTATAAAGTGCTGTACCCTTAAAGAGTCCCATGTGTTA AAAAAAAAAAAATGCACTTTGGTCCAGAAGGACCCTTCAACTTAATTTTTCCACTGTCGT CAAAACTTGATTAAACCTCTCCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCGTCGAAGGGCAGGAAGAATGGACTGAAAGTCTCTGGAGCAGGCGCGGATCCCACCG GCCCAGGCTCCTAGGGAACCAGCCTCACTTAGCTTGAGCTTGTTTTATTTTTGTCGTCTT TTCTTTTTATCTCGTATGTTTTAAAAACCTCTTGGAATTTCTGGGCGATTTTGCAGTCAT GGAGGTAGCTCAGCCCAAGGACCTGGAGGAGGACTTTGGCCAGGCCAAGAAGAGACATGC AGAGCTGTGCAGGCAGAAACGGATCTTCAATGCCAGGAACAGGATCTTTGGGGGAGACAT AGACGCCTGGAACGTACAGGTTTGTGACCAGAAGATAAGAGAAGCAACGGAAAAAGCTAG ACAGGAAACATTTGCTGCTGAAATGAGGCAGAATGACAAAATCACATGCATATTAGAAGA CCGGGCAAGGAGAGACAGGAAAAATCTCTGTAAAGCTATCAATGACTTCCAGCAGAGCTT TCAGAAGCCAGAAACTCGCCGTGAATTTGACCTCTCTGACCCCCTTGCCCTTAAGAAAGA TCTTCCAGCCCGGCAGTCCGATAATGATGCTCGGAATACGGTGTCAGGAATGCAGAAATT CATGGGAGAGGATTTAAACATCCATCAGAGGAGGAAATTCCAAGAGGAACAAAACAGAGA ATGGTCCTTGCAACAGCAGAGGGAGTGGAAGATTGCCCGTGAGGACCAAAAACACGCCGA GGATCTCTACTTGGAGACCAGGCTGCAGTTTGATGAAACAGCCAAGCATTTACAGAATCT GGAAGGCACCACCAGAAAGGCGGTTTGTGCAGCTGTGAAAGAATTCAACAAGAACCAGGC CTTGGAGTCAGCGGAAAAGAAACGTCAAGAGAGAAAACAGGAACAAGAGGACAACTTGGC CGAGATCACCAACCTGCTGCGTGGGGACCTGCTGTCAGAGGACCCGCAGCAGGCAGCCAG TTCCTTCGGGCCCCATCGCGTGGTCCCCGACCGCTGGAAGGGCATGACCCAGGAGCAGCT GGAGCAGATCCGCCTGGTTCAGAAACAGCAAGTCCAGGAGAAGCTGAGGCTCCAGGAAGA GGAGCGCCAGCGGGACATGGACTGGGACCGGCAGAGGGTTCAGAAGGCTCGCGCCACCTT GCTGTCGGAGCGGCAGCTGCAGCGCCAGCAGCGTGCGCTGCGCAGAGCCCTGGACGGCAG CAACCTCAGCCTGGCCAAGGAGCAGCTTTTGCAGAAAAAATATATGAAGGAAATCTATAC AAATCAGCCCACTGAAGATTATTTCACACAATTTAATACAAGAAGTCGATAATGAAAAGG CCACCTGCCTTCCTGCTAAATTGTATAAAGTGCTGTACCCTTAAAGAGTCCCATGTGTTA AAAAAAAAAAAATGCACTTTGGTCCAGAAGGACCCTTCAACTTAATTTTTCCACTGTCGT CAAAACTTGATTAAACCTCTCCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 533-712, - strand, RNAz p=0.98026 | |
| 599-712, + strand, RNAz p=0.929645 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 533-712, - strand, RNAz p=0.98026 | |
| 599-712, + strand, RNAz p=0.929645 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 11-298, gnl|bosTau2|chr5 (74692254-74691966) | |
| 11-298, gnl|Hg17|chr22 (44130153-44130435) | |
| 11-298, gnl|Mm7|chr15 (85214441-85214708) | |
| 374-712, gnl|bosTau2|chr5 (74688937-74688599) | |
| 374-712, gnl|canFam2|chr10 (23691519-23691167) | |
| 374-712, gnl|galGal2|chr1 (66986640-66986990) | |
| 374-712, gnl|hg17|chr22 (44133975-44134328) | |
| 374-712, gnl|Hg17|chr22 (44134018-44134356) | |
| 374-712, gnl|loxAfr1|scaffold_162871 (4262-4614) | |
| 374-712, gnl|mm7|chr15 (85217494-85217845) | |
| 374-712, gnl|Mm7|chr15 (85217535-85217873) | |
| 374-712, gnl|monDom2|scaffold_107 (310653-311004) | |
| 374-712, gnl|oryCun1|scaffold_147505 (4044-4389) | |
| 374-712, gnl|panTro1|chr23 (44468177-44468530) | |
| 374-712, gnl|rheMac2|chr10 (89415063-89415416) | |
| 374-712, gnl|rn3|chr7 (123178022-123178369) | |
| 374-712, gnl|xenTro1|scaffold_1023 (103515-103857) | |
| 836-1066, gnl|bosTau2|chr5 (74685515-74685285) | |
| 836-1066, gnl|canFam2|chr10 (23685679-23685426) | |
| 836-1066, gnl|dasNov1|scaffold_43685 (46250-46475) | |
| 836-1066, gnl|echTel1|scaffold_185979 (11075-10819) | |
| 836-1066, gnl|fr1|chrUn (19895447-19895199) | |
| 836-1066, gnl|galGal2|chr1 (66991244-66991480) | |
| 836-1066, gnl|hg17|chr22 (44142351-44142604) | |
| 836-1066, gnl|Hg17|chr22 (44142362-44142592) | |
| 836-1066, gnl|mm7|chr15 (85223792-85224043) | |
| 836-1066, gnl|Mm7|chr15 (85223803-85224033) | |
| 836-1066, gnl|panTro1|chr23 (44479888-44480141) | |
| 836-1066, gnl|rheMac2|chr10 (89425321-89425574) | |
| 836-1066, gnl|rn3|chr7 (123184808-123185059) | |
| 836-1066, gnl|xenTro1|scaffold_1023 (121729-121968) | |
| 1234-1464, gnl|bosTau2|chr5 (74681565-74681327) | |
| 1234-1464, gnl|Hg17|chr22 (44148701-44148932) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-298, gnl|bosTau2|chr5 (74692254-74691966) | |
| 11-298, gnl|Hg17|chr22 (44130153-44130435) | |
| 11-298, gnl|Mm7|chr15 (85214441-85214708) | |
| 374-712, gnl|bosTau2|chr5 (74688937-74688599) | |
| 374-712, gnl|canFam2|chr10 (23691519-23691167) | |
| 374-712, gnl|galGal2|chr1 (66986640-66986990) | |
| 374-712, gnl|hg17|chr22 (44133975-44134328) | |
| 374-712, gnl|Hg17|chr22 (44134018-44134356) | |
| 374-712, gnl|loxAfr1|scaffold_162871 (4262-4614) | |
| 374-712, gnl|mm7|chr15 (85217494-85217845) | |
| 374-712, gnl|Mm7|chr15 (85217535-85217873) | |
| 374-712, gnl|monDom2|scaffold_107 (310653-311004) | |
| 374-712, gnl|oryCun1|scaffold_147505 (4044-4389) | |
| 374-712, gnl|panTro1|chr23 (44468177-44468530) | |
| 374-712, gnl|rheMac2|chr10 (89415063-89415416) | |
| 374-712, gnl|rn3|chr7 (123178022-123178369) | |
| 374-712, gnl|xenTro1|scaffold_1023 (103515-103857) | |
| 836-1066, gnl|bosTau2|chr5 (74685515-74685285) | |
| 836-1066, gnl|canFam2|chr10 (23685679-23685426) | |
| 836-1066, gnl|dasNov1|scaffold_43685 (46250-46475) | |
| 836-1066, gnl|echTel1|scaffold_185979 (11075-10819) | |
| 836-1066, gnl|fr1|chrUn (19895447-19895199) | |
| 836-1066, gnl|galGal2|chr1 (66991244-66991480) | |
| 836-1066, gnl|hg17|chr22 (44142351-44142604) | |
| 836-1066, gnl|Hg17|chr22 (44142362-44142592) | |
| 836-1066, gnl|mm7|chr15 (85223792-85224043) | |
| 836-1066, gnl|Mm7|chr15 (85223803-85224033) | |
| 836-1066, gnl|panTro1|chr23 (44479888-44480141) | |
| 836-1066, gnl|rheMac2|chr10 (89425321-89425574) | |
| 836-1066, gnl|rn3|chr7 (123184808-123185059) | |
| 836-1066, gnl|xenTro1|scaffold_1023 (121729-121968) | |
| 1234-1464, gnl|bosTau2|chr5 (74681565-74681327) | |
| 1234-1464, gnl|Hg17|chr22 (44148701-44148932) |