Non-Coding RNA Search

Ss1.1-Tra1-TCH01G070051.5

Sequence:


               
               AATTAAATGTCATGAGAAAGGCTGTCCTTAGGGATCAAAAGTAGAAGGAAACAAATGAAC
CTCACTCGGTATCCAGTTGGTAGAACAGAGGAACTATTCTAGTGACCAAAGCATCAGAAT
CCCTACTGGCCTTCTGGGATATACCCTTAAGACAAAAAGAACTAGGGAAAAAAAAATTTA
AGTTTTTCCTAGTGAATATTGTGATTCTGAAGCTGGTGTGTATTGTAGCATGGACTAGGG
CAAGTGAGTAATTACATTACTGGTAAGGACCAAGATATTTGGTGTGGAAGAAAGAAGATA
CAGATGTAAGGTTGTGAAATTCTGGATTTGCACTGACATTATTAGTCTGAACTCATCATG
CCTGTTATCTTTCAAACACATTCATACATTTTCTAGCTGGGTCCCTGAAAAAGCCTTGTA
AACAATAACCAACTCAGTGCAAAGAGCATCTCTAAGTCTGTAGATTAGGATCTTAAAATA
TATTGGAAATACTTACCAAATGAAACTGAGAAAGAAATGACTGATTCCTTATCTGGGGCA
GGAAATGGATGAGATGAGTCTGGAACATCTTGTCCTGCCAGATGGCGAGGTAGTTCTCGG
AGACTACTGAGATGGTGTCAAAAGGCCACAGGAGCCAACCTGATTAGATTCTCACCAGCA
ACTTAAGCACCAATAAGATAAAACAATGGATTTAAACCCCTCAAGTGTGTGTAGCCCTGA
AGTTCATAGTGATGCTTAATAAAGTAAAAAAGCTCGTGATCTTCTTTGAAAGATAAAGGG
AAGCAAGTAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAAATGTCATGAGAAAGGCTGTCCTTAGGGATCAAAAGTAGAAGGAAACAAATGAAC
CTCACTCGGTATCCAGTTGGTAGAACAGAGGAACTATTCTAGTGACCAAAGCATCAGAAT
CCCTACTGGCCTTCTGGGATATACCCTTAAGACAAAAAGAACTAGGGAAAAAAAAATTTA
AGTTTTTCCTAGTGAATATTGTGATTCTGAAGCTGGTGTGTATTGTAGCATGGACTAGGG
CAAGTGAGTAATTACATTACTGGTAAGGACCAAGATATTTGGTGTGGAAGAAAGAAGATA
CAGATGTAAGGTTGTGAAATTCTGGATTTGCACTGACATTATTAGTCTGAACTCATCATG
CCTGTTATCTTTCAAACACATTCATACATTTTCTAGCTGGGTCCCTGAAAAAGCCTTGTA
AACAATAACCAACTCAGTGCAAAGAGCATCTCTAAGTCTGTAGATTAGGATCTTAAAATA
TATTGGAAATACTTACCAAATGAAACTGAGAAAGAAATGACTGATTCCTTATCTGGGGCA
GGAAATGGATGAGATGAGTCTGGAACATCTTGTCCTGCCAGATGGCGAGGTAGTTCTCGG
AGACTACTGAGATGGTGTCAAAAGGCCACAGGAGCCAACCTGATTAGATTCTCACCAGCA
ACTTAAGCACCAATAAGATAAAACAATGGATTTAAACCCCTCAAGTGTGTGTAGCCCTGA
AGTTCATAGTGATGCTTAATAAAGTAAAAAAGCTCGTGATCTTCTTTGAAAGATAAAGGG
AAGCAAGTAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-293, + strand, RNAz p=0.986491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-293, + strand, RNAz p=0.986491

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               117-382, gnl|bosTau2|chr23 (18227182-18227443)
               

               
               117-382, gnl|Hg17|chr6 (46410844-46407463)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-382, gnl|bosTau2|chr23 (18227182-18227443)
               

               
               117-382, gnl|Hg17|chr6 (46410844-46407463)

	117-382, gnl\|bosTau2\|chr23 (18227182-18227443)
	117-382, gnl\|Hg17\|chr6 (46410844-46407463)