Ss1.1-Tra1-TCH01G080032.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAAAATCATCAAAGATGTTAACAAGTCACAAGGTGTTTGGCCCATTACTGAGAGAGAA GATGACCTGAAAATCTCTGCCATGGTTTCTCCTAACTTTGATTCAGTATCTCAAGCTACT GATGTTGAGGTGGGAGCTGACCTTGTCCCTTCAGTCACAGTGAAGGTTACACTGCAGAAT CGAGTGGGATTGCAAAAGATCAAATTATCGATTTATGTGCAGCCACCTTTAGTATTGACT TGTGATCAGTTCACCTTTGAATTTATGGCACCAGAGATGACTAGAACAGTAAGCTTTTCT GTTTACCTGAAGGGAAGTTATACACCATCTGAATTGGAAGGAAATGCTGTTGTTTCTTAT TCCAGACCAACAGATCGAAATCCTGATGGCATTCCTCGAGTTATCCAATGTAAATTTAGA CTTCCCCTAAAATTAATCTGCTTACCATGCCAGCCTTCAAAAACTGCAAGCCACAAACTA ACTATTGATACCAACAAATCTCCAGTCAGTCTTCTCAATCTCTTTCCAGGCTTTGCTAGT CAGTCAGAAGATGATCAGGTGAATGTAATGGGCTTTCGCTTCTTAGGAGGTTCCCGAGTT ACTCTTCTTGCTTCCAAAACCTCTCAACGATATCGTATTCAGAGTGAACAGTTTGAGGAT CTTTGGCTCATAACAAATGAGCTTATTATTCGCCTTCAAGAATATTTTGAANAACAGGGA ATCAAAGATTTTGCATGTTCTTTTTCTGGATCTATGCCCCTTCAGGAATATTTTGAGTTG ATCGATCATCATTTTGAGTTGCGGATAAATGGTGAAAAATTAGAGGAACTCTTATCTGAA AGAGCTGTACAGTTTCGGGCCATTTCACGTCGTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAAAATCATCAAAGATGTTAACAAGTCACAAGGTGTTTGGCCCATTACTGAGAGAGAA GATGACCTGAAAATCTCTGCCATGGTTTCTCCTAACTTTGATTCAGTATCTCAAGCTACT GATGTTGAGGTGGGAGCTGACCTTGTCCCTTCAGTCACAGTGAAGGTTACACTGCAGAAT CGAGTGGGATTGCAAAAGATCAAATTATCGATTTATGTGCAGCCACCTTTAGTATTGACT TGTGATCAGTTCACCTTTGAATTTATGGCACCAGAGATGACTAGAACAGTAAGCTTTTCT GTTTACCTGAAGGGAAGTTATACACCATCTGAATTGGAAGGAAATGCTGTTGTTTCTTAT TCCAGACCAACAGATCGAAATCCTGATGGCATTCCTCGAGTTATCCAATGTAAATTTAGA CTTCCCCTAAAATTAATCTGCTTACCATGCCAGCCTTCAAAAACTGCAAGCCACAAACTA ACTATTGATACCAACAAATCTCCAGTCAGTCTTCTCAATCTCTTTCCAGGCTTTGCTAGT CAGTCAGAAGATGATCAGGTGAATGTAATGGGCTTTCGCTTCTTAGGAGGTTCCCGAGTT ACTCTTCTTGCTTCCAAAACCTCTCAACGATATCGTATTCAGAGTGAACAGTTTGAGGAT CTTTGGCTCATAACAAATGAGCTTATTATTCGCCTTCAAGAATATTTTGAANAACAGGGA ATCAAAGATTTTGCATGTTCTTTTTCTGGATCTATGCCCCTTCAGGAATATTTTGAGTTG ATCGATCATCATTTTGAGTTGCGGATAAATGGTGAAAAATTAGAGGAACTCTTATCTGAA AGAGCTGTACAGTTTCGGGCCATTTCACGTCGTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 626-744, - strand, RNAz p=0.580532 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 626-744, - strand, RNAz p=0.580532 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 263-373, gnl|bosTau2|chr7 (46161032-46160922) | |
| 263-373, gnl|Hg17|chr7 (33164065-33164175) | |
| 263-373, gnl|Mm7|chr9 (22524771-22524881) | |
| 521-625, gnl|bosTau2|chr1 (9558737-9558633) | |
| 521-625, gnl|canFam2|chr14 (48373137-48373254) | |
| 521-625, gnl|danRer3|chrNA (149995262-149995158) | |
| 521-625, gnl|dasNov1|scaffold_18859 (10163-10281) | |
| 521-625, gnl|echTel1|scaffold_277400 (45337-45450) | |
| 521-625, gnl|galGal2|chr2 (46977077-46976960) | |
| 521-625, gnl|hg17|chr7 (33180605-33180721) | |
| 521-625, gnl|Hg17|chr7 (33180610-33180714) | |
| 521-625, gnl|loxAfr1|scaffold_74 (198447-198332) | |
| 521-625, gnl|mm7|chr9 (22537848-22537965) | |
| 521-625, gnl|Mm7|chr9 (22537854-22537958) | |
| 521-625, gnl|monDom2|scaffold_210 (755069-755191) | |
| 521-625, gnl|panTro1|chr6_random (27750685-27750801) | |
| 521-625, gnl|rheMac2|chr3 (92779407-92779291) | |
| 521-625, gnl|rn3|chr8 (22339039-22339156) | |
| 521-625, gnl|xenTro1|scaffold_241 (486940-487056) | |
| 626-806, gnl|bosTau2|chr1 (9544868-9544688) | |
| 626-806, gnl|canFam2|chr14 (48381316-48381482) | |
| 626-806, gnl|danRer3|chrNA (149992721-149992564) | |
| 626-806, gnl|dasNov1|scaffold_99694 (3144-3305) | |
| 626-806, gnl|echTel1|scaffold_297746 (11630-11463) | |
| 626-806, gnl|fr1|chrUn (184663735-184663897) | |
| 626-806, gnl|galGal2|chr2 (46972572-46972405) | |
| 626-806, gnl|hg17|chr7 (33196505-33196667) | |
| 626-806, gnl|Hg17|chr7 (33196518-33196698) | |
| 626-806, gnl|loxAfr1|scaffold_74 (183582-183416) | |
| 626-806, gnl|mm7|chr9 (22549582-22549747) | |
| 626-806, gnl|Mm7|chr9 (22549598-22549774) | |
| 626-806, gnl|monDom2|scaffold_210 (759487-759650) | |
| 626-806, gnl|oryCun1|scaffold_89492 (5569-5733) | |
| 626-806, gnl|panTro1|chr6 (34349337-34349499) | |
| 626-806, gnl|rheMac2|chr3 (92762954-92762792) | |
| 626-806, gnl|rn3|chr8 (22349243-22349408) | |
| 626-806, gnl|tetNig1|chrUn_random (41451329-41451173) | |
| 626-806, gnl|xenTro1|scaffold_241 (487221-487382) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 263-373, gnl|bosTau2|chr7 (46161032-46160922) | |
| 263-373, gnl|Hg17|chr7 (33164065-33164175) | |
| 263-373, gnl|Mm7|chr9 (22524771-22524881) | |
| 521-625, gnl|bosTau2|chr1 (9558737-9558633) | |
| 521-625, gnl|canFam2|chr14 (48373137-48373254) | |
| 521-625, gnl|danRer3|chrNA (149995262-149995158) | |
| 521-625, gnl|dasNov1|scaffold_18859 (10163-10281) | |
| 521-625, gnl|echTel1|scaffold_277400 (45337-45450) | |
| 521-625, gnl|galGal2|chr2 (46977077-46976960) | |
| 521-625, gnl|hg17|chr7 (33180605-33180721) | |
| 521-625, gnl|Hg17|chr7 (33180610-33180714) | |
| 521-625, gnl|loxAfr1|scaffold_74 (198447-198332) | |
| 521-625, gnl|mm7|chr9 (22537848-22537965) | |
| 521-625, gnl|Mm7|chr9 (22537854-22537958) | |
| 521-625, gnl|monDom2|scaffold_210 (755069-755191) | |
| 521-625, gnl|panTro1|chr6_random (27750685-27750801) | |
| 521-625, gnl|rheMac2|chr3 (92779407-92779291) | |
| 521-625, gnl|rn3|chr8 (22339039-22339156) | |
| 521-625, gnl|xenTro1|scaffold_241 (486940-487056) | |
| 626-806, gnl|bosTau2|chr1 (9544868-9544688) | |
| 626-806, gnl|canFam2|chr14 (48381316-48381482) | |
| 626-806, gnl|danRer3|chrNA (149992721-149992564) | |
| 626-806, gnl|dasNov1|scaffold_99694 (3144-3305) | |
| 626-806, gnl|echTel1|scaffold_297746 (11630-11463) | |
| 626-806, gnl|fr1|chrUn (184663735-184663897) | |
| 626-806, gnl|galGal2|chr2 (46972572-46972405) | |
| 626-806, gnl|hg17|chr7 (33196505-33196667) | |
| 626-806, gnl|Hg17|chr7 (33196518-33196698) | |
| 626-806, gnl|loxAfr1|scaffold_74 (183582-183416) | |
| 626-806, gnl|mm7|chr9 (22549582-22549747) | |
| 626-806, gnl|Mm7|chr9 (22549598-22549774) | |
| 626-806, gnl|monDom2|scaffold_210 (759487-759650) | |
| 626-806, gnl|oryCun1|scaffold_89492 (5569-5733) | |
| 626-806, gnl|panTro1|chr6 (34349337-34349499) | |
| 626-806, gnl|rheMac2|chr3 (92762954-92762792) | |
| 626-806, gnl|rn3|chr8 (22349243-22349408) | |
| 626-806, gnl|tetNig1|chrUn_random (41451329-41451173) | |
| 626-806, gnl|xenTro1|scaffold_241 (487221-487382) |