Non-Coding RNA Search

Ss1.1-Tra1-TCH01G110079.5

Sequence:


               
               ATTTTCGCTCAACTTATCACGTCGCACAGTTTAATACCTAGTCCTAAGACCAAAGTTACC
ACACATGGGCCCATATTTATTGATCTAATAAATGTGTTGACTCAACAGTGAATTGACACA
GTTTCTACATAGACTTGTTCAGTGTTTTTGTCCCTGTGGCTCCAAGTAATGTTTTAGGAA
TGCTGCCCTCTTGAAAGACTGAATTCATATGTGCTGTGAAGTTTGGGATTTTGATGAGCT
TCTCTGTGATTTAAGGATGAGTCATGATTTGCAGTAGAATATCAAGATGTAGTAACAGGA
AGTCCAGGGCTGCTACACATCAAAATAGAATGTTCAGTGATGAAACCAGAGAAACTCGGT
TGGACCAAAAATACACGTTGAACTTCTCTAACTGTAAGGAGGGAGGAAGGTGCCTCTTGC
ACACTCGGTGCCTCTTATTTATTACTGTTTCATGTCAGTAAAGTTTCCAGACTTTGCAAC
TGGTCTGTTCCATGGCTTTTCAGTTCAAGATTCCTCTTGCCCATGGCCAGCTTGAGTGGC
GATCATCCAGCTTTTGGTGTGAAACCAGGGCAGTGAGACCGTGAAAACTCCGGTTTGGCC
ACTTACAGTGAATTGAATCAGCAGCACGCAGGTGTGTGTGTGCATGTTAGGAAATCCTAA
GGACCTTCACTTGTAGTAGATCATTCAGTCTTTTAAGTCACCTGCTCTTCGTAGAAACTT
GACTCCCCATCATCCCGATCCACAACCAGAATAAACATGGCCTTTCATCCATTACCAGAA
ACGTAACATATATGCCAGCAGCTTCAGGGTAAACCTTTGAATTGGGCATTTCAGTACATT
GTAATGTGGTTGAATTGCTATTAGGAAGTACTCATTGACCACTTGATGTTGGTTAATTTT
CAGCGGCGGGAAAGTAATTATTAAGAATTCAATGGGATTATTTTATAATTGGCTGTGAGA
TTTATTTGCATATTTTTCAAGAAATTAAGATAAGTTCCCTGGGGGGCTAGTGGTTAAGGA
TGCGGCATCCTGACTGCTGGGGTGCAAGTTCAATCCCTGGCCCGAGAGCTTCAGAATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCGCTCAACTTATCACGTCGCACAGTTTAATACCTAGTCCTAAGACCAAAGTTACC
ACACATGGGCCCATATTTATTGATCTAATAAATGTGTTGACTCAACAGTGAATTGACACA
GTTTCTACATAGACTTGTTCAGTGTTTTTGTCCCTGTGGCTCCAAGTAATGTTTTAGGAA
TGCTGCCCTCTTGAAAGACTGAATTCATATGTGCTGTGAAGTTTGGGATTTTGATGAGCT
TCTCTGTGATTTAAGGATGAGTCATGATTTGCAGTAGAATATCAAGATGTAGTAACAGGA
AGTCCAGGGCTGCTACACATCAAAATAGAATGTTCAGTGATGAAACCAGAGAAACTCGGT
TGGACCAAAAATACACGTTGAACTTCTCTAACTGTAAGGAGGGAGGAAGGTGCCTCTTGC
ACACTCGGTGCCTCTTATTTATTACTGTTTCATGTCAGTAAAGTTTCCAGACTTTGCAAC
TGGTCTGTTCCATGGCTTTTCAGTTCAAGATTCCTCTTGCCCATGGCCAGCTTGAGTGGC
GATCATCCAGCTTTTGGTGTGAAACCAGGGCAGTGAGACCGTGAAAACTCCGGTTTGGCC
ACTTACAGTGAATTGAATCAGCAGCACGCAGGTGTGTGTGTGCATGTTAGGAAATCCTAA
GGACCTTCACTTGTAGTAGATCATTCAGTCTTTTAAGTCACCTGCTCTTCGTAGAAACTT
GACTCCCCATCATCCCGATCCACAACCAGAATAAACATGGCCTTTCATCCATTACCAGAA
ACGTAACATATATGCCAGCAGCTTCAGGGTAAACCTTTGAATTGGGCATTTCAGTACATT
GTAATGTGGTTGAATTGCTATTAGGAAGTACTCATTGACCACTTGATGTTGGTTAATTTT
CAGCGGCGGGAAAGTAATTATTAAGAATTCAATGGGATTATTTTATAATTGGCTGTGAGA
TTTATTTGCATATTTTTCAAGAAATTAAGATAAGTTCCCTGGGGGGCTAGTGGTTAAGGA
TGCGGCATCCTGACTGCTGGGGTGCAAGTTCAATCCCTGGCCCGAGAGCTTCAGAATGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               237-356, + strand, RNAz p=0.699992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-356, + strand, RNAz p=0.699992

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-605, gnl|bosTau2|chr5 (36839839-36839229)
               

               
               1-605, gnl|Hg17|chr12 (95095103-95095698)
               

               
               1-605, gnl|Mm7|chr10 (92865230-92864680)
               


               
               632-991, gnl|bosTau2|chr5 (36838914-36838569)
               

               
               632-991, gnl|Hg17|chr12 (95095768-95096108)
               

               
               632-991, gnl|Mm7|chr10 (92864624-92864273)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-605, gnl|bosTau2|chr5 (36839839-36839229)
               

               
               1-605, gnl|Hg17|chr12 (95095103-95095698)
               

               
               1-605, gnl|Mm7|chr10 (92865230-92864680)
               


               
               632-991, gnl|bosTau2|chr5 (36838914-36838569)
               

               
               632-991, gnl|Hg17|chr12 (95095768-95096108)
               

               
               632-991, gnl|Mm7|chr10 (92864624-92864273)

	1-605, gnl\|bosTau2\|chr5 (36839839-36839229)
	1-605, gnl\|Hg17\|chr12 (95095103-95095698)
	1-605, gnl\|Mm7\|chr10 (92865230-92864680)

	632-991, gnl\|bosTau2\|chr5 (36838914-36838569)
	632-991, gnl\|Hg17\|chr12 (95095768-95096108)
	632-991, gnl\|Mm7\|chr10 (92864624-92864273)