Non-Coding RNA Search

Ss1.1-Tra1-TCH01G110093.5

Sequence:


               
               TGTTGGCCTACTGGATTCTAATAGGTTTGAAAGCTTTTTTTTTAATCTTCACTGATAAAA
GGAAAGCTTTCTCTTGATGATCAAGAGGAGACATGCGAAGGAGTGCTATTCAAAGTATGC
CCTCCCTATGTCCTGTGTCCTATGTCCTTTCTCCTTCTAGATTCAATTAATCCTTTTCTC
AGGGGTTCATTCCACCCATGCCTTTGTGCCCTGACTTTGGAAGGTTCTTGCAGAGCATGA
AGCAAACATGGGTAGGGTTGTTGTTTTTTGAAAAGTTTCTCCCAAGAAGTAACGTCAGAA
GAGCACAGCCGAGATGCTTGGTCCTGTTCTCCATGAAAGCTTTTCATTCGTTTCTTTGTT
AGAAACTGCAGCTTTGACTCTGTGATAACTGTGACCTGAAGTTGCCGTGCTTATATAAAT
CCTTGCAAATAAACCCAATTGTACCCAATAAATTTGGAGACATTTGGGGGAGAGGGATCA
GAAGACAGGGTTCCCTTTGCTAGAAGCGGACCGGAAACTGGCGGGGCTTTAAATGTCCTT
TGCCCCAGCTCTTCTACATTTTACTTGCAGTTTTTTGAACTCCTTCATCTTCAGCAGGCT
CACATTTAGCCTCTATTTGCAAATCTCCATTCCCTGTGTCCTGCTTTGTTACTGACAGCC
ACTTGTTTCGATCTCAAAGGCTTCATTAACTCCCCATTGACACGGTGTCCAGCATTACCT
ATAACCAATATCACAGTGAATGATAAAGACCACAAACATTGGCTACAGCCTGCTTTCAGT
TTCCAGATTTGGCTTTCACCCAGTACTTTTGATCAAGGCACAGAGTCTTCCAGAATGTTT
ATAATGTTGTAGCACCACTTCATTGGCGTAAATTCGTTCCTCAACCCAGATGGTGATCCG
CTTACGAAGGGATTTTTCTTCCGTACTTATTTGTTATTTCAAAACCGGGGGTTGGGAAGA
GTAGGTCCATTTTGTAACTGGTCTTTGTGCCAGAGGTAAAAGCCATTGGCAAAGATCTTC
AAAGAAGGGGGGAGCTGTTGGCAGGGCCAGGGGCTGGTGGGCGTTACTCAGTTCCGTTTG
GTTTATACTCCCTTGGGGGAATTTGTACCCAAAGCATTTGAAGTTTAGTTCTCTACTGCC
TCTCACCCTCCCCAAAAGCATATGTTTTCTGCATTCTTTTTCCTGGTTCCCTTTTCATAA
GCGGAAGTTTCCTTCCTTATAAGGTTTAGATTTGTTTGAAAACACTCACGACTCTAATTT
TTTGGTAACGTAGTAATATTCGGGCACCAAGCCTGCCCCTTCTTAGTTTACGGAGGGCTT
ACNAGTGCTAATTTACAAAACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGGCCTACTGGATTCTAATAGGTTTGAAAGCTTTTTTTTTAATCTTCACTGATAAAA
GGAAAGCTTTCTCTTGATGATCAAGAGGAGACATGCGAAGGAGTGCTATTCAAAGTATGC
CCTCCCTATGTCCTGTGTCCTATGTCCTTTCTCCTTCTAGATTCAATTAATCCTTTTCTC
AGGGGTTCATTCCACCCATGCCTTTGTGCCCTGACTTTGGAAGGTTCTTGCAGAGCATGA
AGCAAACATGGGTAGGGTTGTTGTTTTTTGAAAAGTTTCTCCCAAGAAGTAACGTCAGAA
GAGCACAGCCGAGATGCTTGGTCCTGTTCTCCATGAAAGCTTTTCATTCGTTTCTTTGTT
AGAAACTGCAGCTTTGACTCTGTGATAACTGTGACCTGAAGTTGCCGTGCTTATATAAAT
CCTTGCAAATAAACCCAATTGTACCCAATAAATTTGGAGACATTTGGGGGAGAGGGATCA
GAAGACAGGGTTCCCTTTGCTAGAAGCGGACCGGAAACTGGCGGGGCTTTAAATGTCCTT
TGCCCCAGCTCTTCTACATTTTACTTGCAGTTTTTTGAACTCCTTCATCTTCAGCAGGCT
CACATTTAGCCTCTATTTGCAAATCTCCATTCCCTGTGTCCTGCTTTGTTACTGACAGCC
ACTTGTTTCGATCTCAAAGGCTTCATTAACTCCCCATTGACACGGTGTCCAGCATTACCT
ATAACCAATATCACAGTGAATGATAAAGACCACAAACATTGGCTACAGCCTGCTTTCAGT
TTCCAGATTTGGCTTTCACCCAGTACTTTTGATCAAGGCACAGAGTCTTCCAGAATGTTT
ATAATGTTGTAGCACCACTTCATTGGCGTAAATTCGTTCCTCAACCCAGATGGTGATCCG
CTTACGAAGGGATTTTTCTTCCGTACTTATTTGTTATTTCAAAACCGGGGGTTGGGAAGA
GTAGGTCCATTTTGTAACTGGTCTTTGTGCCAGAGGTAAAAGCCATTGGCAAAGATCTTC
AAAGAAGGGGGGAGCTGTTGGCAGGGCCAGGGGCTGGTGGGCGTTACTCAGTTCCGTTTG
GTTTATACTCCCTTGGGGGAATTTGTACCCAAAGCATTTGAAGTTTAGTTCTCTACTGCC
TCTCACCCTCCCCAAAAGCATATGTTTTCTGCATTCTTTTTCCTGGTTCCCTTTTCATAA
GCGGAAGTTTCCTTCCTTATAAGGTTTAGATTTGTTTGAAAACACTCACGACTCTAATTT
TTTGGTAACGTAGTAATATTCGGGCACCAAGCCTGCCCCTTCTTAGTTTACGGAGGGCTT
ACNAGTGCTAATTTACAAAACTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1045-1161, - strand, RNAz p=0.602546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1045-1161, - strand, RNAz p=0.602546

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1056-1119, - strand, RNAmicro p=0.959032

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1056-1119, - strand, RNAmicro p=0.959032

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               15-1344, gnl|bosTau2|chr20 (13980690-13979365)
               

               
               15-1344, gnl|Hg17|chr5 (53265284-53263665)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1344, gnl|bosTau2|chr20 (13980690-13979365)
               

               
               15-1344, gnl|Hg17|chr5 (53265284-53263665)

	15-1344, gnl\|bosTau2\|chr20 (13980690-13979365)
	15-1344, gnl\|Hg17\|chr5 (53265284-53263665)