Non-Coding RNA Search

Ss1.1-Tra1-TCH01G120004.5

Sequence:


               
               TTTCTCGTCCCCAGCGTCGAGCTGAGTCCTCTAACTGGCTTTCCAGGGAAAGAATCCGGC
TCTGAGCTCGCTCCAGCTTGGCCAGGAGGTTAAACTTGTCTGAATTATCCCCAGGGTCCA
CCGGCAGGGCCTGCTGCTGCAGAATGATGGGGGCCGACTGGTGGCGGTTCTTGTCCAGTT
CAGCCCGCAGCCTCGAGTTTTCTGCCAGCAGCACTGAGTAAATGTCAACAGGCAGGGTCT
CTCCCGTAGGAGCCGGGGGAAGGCCAGAGGCTGAGAGCATGGGGAAGGCCACGTTGGGTT
TTCCCTGCAGCCTCTTCTGCAGCGGCTCATTCCTATCCTGCAGCCTGTCCTCCAGCACCC
GCTCCATCTTCTCGATCACCTTCTCCTGATGCCTCACGGTCTCCTCCAGAGCCTTCATCT
TCTGCAGCTTGTCCTGGTATTGCTTCAGCAGTGCTGACTGTGGCTGCTGAGCCTGGTGCA
GGAGGAGCAGCTCCTTTTCTCGATCATTCTTTCGAATCAGCTCATTCTGCAAATGCTGCA
CCTTGTCCCTCAGCTTCTTCTTGTCCAGCTCACTTAGCAGCAGTTTCTTCTTCATGGATG
CCAGGTTCTGGGCCTTGTTGATATTGTCCTCTTCTTCTTCCTCCTGGGTCAACTGGCTCC
TCAGCATGTGGTTCTCTGCCTCTAGGATGCTGACCTGTTTCTGCAGTAGCAGGATGTCCT
CTGCCATCTTCTTCATGGCCCTCCGGTAGTTGTTCATCTCAGAGCAGCTGTCAAGGAGGC
CTGGGGCAGCCTTGGGGGCCAGAGCGGATGGGGACTCTGCCTCCCCCATCTTTCCTGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTCGTCCCCAGCGTCGAGCTGAGTCCTCTAACTGGCTTTCCAGGGAAAGAATCCGGC
TCTGAGCTCGCTCCAGCTTGGCCAGGAGGTTAAACTTGTCTGAATTATCCCCAGGGTCCA
CCGGCAGGGCCTGCTGCTGCAGAATGATGGGGGCCGACTGGTGGCGGTTCTTGTCCAGTT
CAGCCCGCAGCCTCGAGTTTTCTGCCAGCAGCACTGAGTAAATGTCAACAGGCAGGGTCT
CTCCCGTAGGAGCCGGGGGAAGGCCAGAGGCTGAGAGCATGGGGAAGGCCACGTTGGGTT
TTCCCTGCAGCCTCTTCTGCAGCGGCTCATTCCTATCCTGCAGCCTGTCCTCCAGCACCC
GCTCCATCTTCTCGATCACCTTCTCCTGATGCCTCACGGTCTCCTCCAGAGCCTTCATCT
TCTGCAGCTTGTCCTGGTATTGCTTCAGCAGTGCTGACTGTGGCTGCTGAGCCTGGTGCA
GGAGGAGCAGCTCCTTTTCTCGATCATTCTTTCGAATCAGCTCATTCTGCAAATGCTGCA
CCTTGTCCCTCAGCTTCTTCTTGTCCAGCTCACTTAGCAGCAGTTTCTTCTTCATGGATG
CCAGGTTCTGGGCCTTGTTGATATTGTCCTCTTCTTCTTCCTCCTGGGTCAACTGGCTCC
TCAGCATGTGGTTCTCTGCCTCTAGGATGCTGACCTGTTTCTGCAGTAGCAGGATGTCCT
CTGCCATCTTCTTCATGGCCCTCCGGTAGTTGTTCATCTCAGAGCAGCTGTCAAGGAGGC
CTGGGGCAGCCTTGGGGGCCAGAGCGGATGGGGACTCTGCCTCCCCCATCTTTCCTGCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10439767|dbj|BAB15564.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10439767|dbj|BAB15564.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               394-511, + strand, RNAz p=0.55682

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-511, + strand, RNAz p=0.55682

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               120-289, gnl|bosTau2|chr21 (23254524-23254355)
               

               
               120-289, gnl|Hg17|chr15 (72412241-72412072)
               

               
               120-289, gnl|Mm7|chr9 (58059834-58059987)
               


               
               379-511, gnl|bosTau2|chr21 (23253192-23253060)
               

               
               379-511, gnl|Hg17|chr15 (72410507-72410375)
               

               
               379-511, gnl|Mm7|chr9 (58061085-58061217)
               


               
               601-760, gnl|bosTau2|chr21 (23252538-23252373)
               

               
               601-760, gnl|Hg17|chr15 (72409748-72409583)
               

               
               601-760, gnl|Mm7|chr9 (58061777-58061936)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-289, gnl|bosTau2|chr21 (23254524-23254355)
               

               
               120-289, gnl|Hg17|chr15 (72412241-72412072)
               

               
               120-289, gnl|Mm7|chr9 (58059834-58059987)
               


               
               379-511, gnl|bosTau2|chr21 (23253192-23253060)
               

               
               379-511, gnl|Hg17|chr15 (72410507-72410375)
               

               
               379-511, gnl|Mm7|chr9 (58061085-58061217)
               


               
               601-760, gnl|bosTau2|chr21 (23252538-23252373)
               

               
               601-760, gnl|Hg17|chr15 (72409748-72409583)
               

               
               601-760, gnl|Mm7|chr9 (58061777-58061936)

	120-289, gnl\|bosTau2\|chr21 (23254524-23254355)
	120-289, gnl\|Hg17\|chr15 (72412241-72412072)
	120-289, gnl\|Mm7\|chr9 (58059834-58059987)

	379-511, gnl\|bosTau2\|chr21 (23253192-23253060)
	379-511, gnl\|Hg17\|chr15 (72410507-72410375)
	379-511, gnl\|Mm7\|chr9 (58061085-58061217)

	601-760, gnl\|bosTau2\|chr21 (23252538-23252373)
	601-760, gnl\|Hg17\|chr15 (72409748-72409583)
	601-760, gnl\|Mm7\|chr9 (58061777-58061936)