Non-Coding RNA Search

Ss1.1-Tra1-TCH01G120011.5

Sequence:


               
               TTAGTAAACTCCAAATAAACAGTGAAGTAAACATTCAGTTTGTATTTTGCCTCATTTGTG
TTGTCTTTCTTTTCATTCCCTTTAAAGATGCCAATTCTCGGAAGCAGGAAGCAGAGTGGA
AAGAAAAAGCAATAAAGGAGCTGGAAGAGTGGTATGCAAGGCAGGACGAGCAGTTACAAA
AGACGAAAGCAAACAACAGGTCAGTCCGCGCCGCTTCTAGCACAGCTCATTTGCCAAGAC
CGAGTCGGGTCCATTTCCAGCAGCCAGTGTGGGCTTTCAGCTGCCACCTCTTGTAGTGTG
GAGTGTCTTTGCAGGTTTTCTAAGAAATACTTAAAACATGAGGGTCATGGGTCTCTGTGG
TCTTTCGAATAGTTCAGACCCCCATTGTAGTGAGTCTAGCTCTGCCACTAGAGCTGAGTT
GACATGCACATCCTGTAATGCTGTGGTTCCGCATAATAAAGAGTTATCTCAGGGGTCAAG
TCCACGTGTCATAATGTAGCCCTGGAGTGAAAGGCCGCTTTCATGACTCTGCCAGGATTT
CAGTATTTGGAGGTGATCACGTCGACTGGGTTGTGTCACATCCCCTAAATACAGCCCATC
GCTCCGAGGGCTGCTTCCCAGATGGTCCGCTAGCGGGGACATGTGCTTTTTCACTAGGTG
GCCAAGATGATCCAACACAGTGACTTCAGGATTAAAGATTCTCTGGGTGCTTATTATTTG
TGTCTAAGAAAATCTCAAGTTGACTCTCTTTAAATGTTCTTTTCAGAATTTACTCTTACT
TAAGGTTAAGTACTTATAGGAGAAATTAGTCATTCTCGTGTTACCACCACCCAGCAGCTG
TGGTCTTAAATGCTTTGCGCTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTAAACTCCAAATAAACAGTGAAGTAAACATTCAGTTTGTATTTTGCCTCATTTGTG
TTGTCTTTCTTTTCATTCCCTTTAAAGATGCCAATTCTCGGAAGCAGGAAGCAGAGTGGA
AAGAAAAAGCAATAAAGGAGCTGGAAGAGTGGTATGCAAGGCAGGACGAGCAGTTACAAA
AGACGAAAGCAAACAACAGGTCAGTCCGCGCCGCTTCTAGCACAGCTCATTTGCCAAGAC
CGAGTCGGGTCCATTTCCAGCAGCCAGTGTGGGCTTTCAGCTGCCACCTCTTGTAGTGTG
GAGTGTCTTTGCAGGTTTTCTAAGAAATACTTAAAACATGAGGGTCATGGGTCTCTGTGG
TCTTTCGAATAGTTCAGACCCCCATTGTAGTGAGTCTAGCTCTGCCACTAGAGCTGAGTT
GACATGCACATCCTGTAATGCTGTGGTTCCGCATAATAAAGAGTTATCTCAGGGGTCAAG
TCCACGTGTCATAATGTAGCCCTGGAGTGAAAGGCCGCTTTCATGACTCTGCCAGGATTT
CAGTATTTGGAGGTGATCACGTCGACTGGGTTGTGTCACATCCCCTAAATACAGCCCATC
GCTCCGAGGGCTGCTTCCCAGATGGTCCGCTAGCGGGGACATGTGCTTTTTCACTAGGTG
GCCAAGATGATCCAACACAGTGACTTCAGGATTAAAGATTCTCTGGGTGCTTATTATTTG
TGTCTAAGAAAATCTCAAGTTGACTCTCTTTAAATGTTCTTTTCAGAATTTACTCTTACT
TAAGGTTAAGTACTTATAGGAGAAATTAGTCATTCTCGTGTTACCACCACCCAGCAGCTG
TGGTCTTAAATGCTTTGCGCTTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56554547|pdb|1XI4|R

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56554547|pdb|1XI4|R

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               25-864, gnl|bosTau2|chr8 (31945421-31946258)
               

               
               25-864, gnl|Hg17|chr9 (36193999-36194834)
               

               
               25-864, gnl|Mm7|chr4 (44039201-44040130)
               


               
               87-204, gnl|bosTau2|chr10 (879560-879444)
               

               
               87-204, gnl|Hg17|chr12 (7650918-7651032)
               

               
               87-204, gnl|Mm7|chr1 (71269654-71269758)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-864, gnl|bosTau2|chr8 (31945421-31946258)
               

               
               25-864, gnl|Hg17|chr9 (36193999-36194834)
               

               
               25-864, gnl|Mm7|chr4 (44039201-44040130)
               


               
               87-204, gnl|bosTau2|chr10 (879560-879444)
               

               
               87-204, gnl|Hg17|chr12 (7650918-7651032)
               

               
               87-204, gnl|Mm7|chr1 (71269654-71269758)

	25-864, gnl\|bosTau2\|chr8 (31945421-31946258)
	25-864, gnl\|Hg17\|chr9 (36193999-36194834)
	25-864, gnl\|Mm7\|chr4 (44039201-44040130)

	87-204, gnl\|bosTau2\|chr10 (879560-879444)
	87-204, gnl\|Hg17\|chr12 (7650918-7651032)
	87-204, gnl\|Mm7\|chr1 (71269654-71269758)