Non-Coding RNA Search

Ss1.1-Tra1-TCH01H040023.5

Sequence:


               
               ATATATTTTTAAAATTCTTTCCAAGCCTATATTTGGTAGGATTTGTCAAGAGAATTTTAG
CCACCTGGTTCAAGTCATCTAATCCAACCAGTCATTGACTCTATTGGCTGATAGATAATG
AGCTGCCAGGAAGTTAAGCCATTGGCCCAAAGGGCATGGCAAGCAGAATCTACTGATTGA
CTTGAACATTTATTTGCACCAATGTTTGCATGTCAATAAGGAAATGAATGTTCATCCTGT
GAAGACTCAGTAAAAGTCTGAGACCAGTGGCCCTTAATGAGTTTATCGTCAATGTCAGTG
AGTGCATTTTGAGGCCATCTAGAAAATTAAGGCCATCTGTCATCTCGTGCCTAAACATGT
GAGATCCAGAGCAATGAGTCTCTTTTTAACTGAGACCGTGCTTTCTGATCATTAAAAAGT
CCTTTCTCTTGGAATAGAGAAGCTGCTCAGGAAGTAGACAGCAAACTGCAGCTTTTCAAG
GAGACCCGCAGGAGGAAGAAAGAGAGGAAGGAGAAGAAACGGCAGCGGAAGGGGGAGGAG
TGCAGCCTGCCCGGCCTCACCTGCTTCACCCACGACAACAACCACTGGCAGACGGCGCCG
TTCTGGAACCGTAGTTGCTTCTTCTAAATGCCACTTCCTGCCACCCTGAGGAGCGCCAGC
AGCCCATGCACAGTTACTTGGCCTAGGATTTCAGCACCGTAAAACCAGAAATCTAGAACG
ATTCCAGAGGAAAGCTTCAGAGCATTTTCTATACTGATGACTAGAATTATTTTGCCCCAA
ATTACTTTTTTCTTTAGAAATTTTTATTTTGGTCCTTTTTTTGTCACACCCATGGCATGC
AGAAGTTCCTGGGCGAAGGCTCAAACCTGTGCCACAGCAGCAACGATGCTGGATCCTTAA
TCAGCTGCACCACCAGGGAACAGCTGGGAAATGCCAAGGTCTAGAGTTCCCGTCCTGGCT
CAGCAGTTAACGCACCTGACTGGCATCCATGAGGACACAGATACGATCCCTGGCCTCACT
CAGTGGGTTAAGGATCCGGTGTTGCCATGAGCTGTGGTGTAGGTTGAAGACTCGGCTCGG
ATCCCAGGTTGCTGTGGCTGTGGCGTAGGCCAGTGGCTACAGCTCCGATTGGACCCCTAG
CCTGGAAACTTCCATACGCCGTGGATGTGGTCCCAAAATAAGAGAAAGACAAAAAAAAAA
AGAAAAAGAAAAAAAGAAAATGCCAAGGTCTCCCCGGGTTTGTCTCCTGATAACATTTCA
CCCAGTACCCAGCCCCTGACAGACTTCCCAGCCAGCAAGACGGCTCTATCACTAAATAAC
TAAAGAAATGGATGAATAATTTTGCCCCAAATATATTTCCTTTCTGCTTTACTTCAAGTG
CACATTCTGTGCATAGAGTAAAAGGAAGTAAAAGCTCCTTAAATGCAGGGACTGTATCCT
GTTTCTCCTCAGTCCCCTTTAGTACCTAACACTGCTTACAGAATAAAAAGGACTTCACAA
AATACTGGGTTTCACAAAGAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATATTTTTAAAATTCTTTCCAAGCCTATATTTGGTAGGATTTGTCAAGAGAATTTTAG
CCACCTGGTTCAAGTCATCTAATCCAACCAGTCATTGACTCTATTGGCTGATAGATAATG
AGCTGCCAGGAAGTTAAGCCATTGGCCCAAAGGGCATGGCAAGCAGAATCTACTGATTGA
CTTGAACATTTATTTGCACCAATGTTTGCATGTCAATAAGGAAATGAATGTTCATCCTGT
GAAGACTCAGTAAAAGTCTGAGACCAGTGGCCCTTAATGAGTTTATCGTCAATGTCAGTG
AGTGCATTTTGAGGCCATCTAGAAAATTAAGGCCATCTGTCATCTCGTGCCTAAACATGT
GAGATCCAGAGCAATGAGTCTCTTTTTAACTGAGACCGTGCTTTCTGATCATTAAAAAGT
CCTTTCTCTTGGAATAGAGAAGCTGCTCAGGAAGTAGACAGCAAACTGCAGCTTTTCAAG
GAGACCCGCAGGAGGAAGAAAGAGAGGAAGGAGAAGAAACGGCAGCGGAAGGGGGAGGAG
TGCAGCCTGCCCGGCCTCACCTGCTTCACCCACGACAACAACCACTGGCAGACGGCGCCG
TTCTGGAACCGTAGTTGCTTCTTCTAAATGCCACTTCCTGCCACCCTGAGGAGCGCCAGC
AGCCCATGCACAGTTACTTGGCCTAGGATTTCAGCACCGTAAAACCAGAAATCTAGAACG
ATTCCAGAGGAAAGCTTCAGAGCATTTTCTATACTGATGACTAGAATTATTTTGCCCCAA
ATTACTTTTTTCTTTAGAAATTTTTATTTTGGTCCTTTTTTTGTCACACCCATGGCATGC
AGAAGTTCCTGGGCGAAGGCTCAAACCTGTGCCACAGCAGCAACGATGCTGGATCCTTAA
TCAGCTGCACCACCAGGGAACAGCTGGGAAATGCCAAGGTCTAGAGTTCCCGTCCTGGCT
CAGCAGTTAACGCACCTGACTGGCATCCATGAGGACACAGATACGATCCCTGGCCTCACT
CAGTGGGTTAAGGATCCGGTGTTGCCATGAGCTGTGGTGTAGGTTGAAGACTCGGCTCGG
ATCCCAGGTTGCTGTGGCTGTGGCGTAGGCCAGTGGCTACAGCTCCGATTGGACCCCTAG
CCTGGAAACTTCCATACGCCGTGGATGTGGTCCCAAAATAAGAGAAAGACAAAAAAAAAA
AGAAAAAGAAAAAAAGAAAATGCCAAGGTCTCCCCGGGTTTGTCTCCTGATAACATTTCA
CCCAGTACCCAGCCCCTGACAGACTTCCCAGCCAGCAAGACGGCTCTATCACTAAATAAC
TAAAGAAATGGATGAATAATTTTGCCCCAAATATATTTCCTTTCTGCTTTACTTCAAGTG
CACATTCTGTGCATAGAGTAAAAGGAAGTAAAAGCTCCTTAAATGCAGGGACTGTATCCT
GTTTCTCCTCAGTCCCCTTTAGTACCTAACACTGCTTACAGAATAAAAAGGACTTCACAA
AATACTGGGTTTCACAAAGAGTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               126-245, + strand, RNAz p=0.976796

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-245, + strand, RNAz p=0.976796

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               11-308, gnl|bosTau2|chr14 (19523247-19522956)
               

               
               11-308, gnl|Hg17|chr8 (70703536-70703824)
               


               
               336-641, gnl|bosTau2|chr14 (19522694-19522388)
               

               
               336-641, gnl|Hg17|chr8 (70704177-70704484)
               


               
               1216-1464, gnl|bosTau2|chr14 (19521827-19521583)
               

               
               1216-1464, gnl|Hg17|chr8 (70704666-70704938)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-308, gnl|bosTau2|chr14 (19523247-19522956)
               

               
               11-308, gnl|Hg17|chr8 (70703536-70703824)
               


               
               336-641, gnl|bosTau2|chr14 (19522694-19522388)
               

               
               336-641, gnl|Hg17|chr8 (70704177-70704484)
               


               
               1216-1464, gnl|bosTau2|chr14 (19521827-19521583)
               

               
               1216-1464, gnl|Hg17|chr8 (70704666-70704938)

	11-308, gnl\|bosTau2\|chr14 (19523247-19522956)
	11-308, gnl\|Hg17\|chr8 (70703536-70703824)

	336-641, gnl\|bosTau2\|chr14 (19522694-19522388)
	336-641, gnl\|Hg17\|chr8 (70704177-70704484)

	1216-1464, gnl\|bosTau2\|chr14 (19521827-19521583)
	1216-1464, gnl\|Hg17\|chr8 (70704666-70704938)