Non-Coding RNA Search

Ss1.1-Tra1-TCH01H060008.5

Sequence:


               
               CTAGTAGTAAATGCCATTTAAAAACTAAATATTAAAATGTTGAAATTTGGGGGATTTATG
TTAACAGTTAACACTGTTATCTTGAGCTTTAATGCTGTAAATATTTCGCTCTCTACTAGG
TTTTCAGGACTGACTGACATCACCCTCAATTAAAATTCTTTATTTTTATCGGCCTAATTT
CAGGTGAACATGCCACACCTCACGCTTGTGCAGACCTGCGTTAAAAGGCTGGAGGGCTCT
TGTGTCCAGGTCCTTCCTGTCAGCCCGTGTCACAAGTAAATCACATCATAGTCTCTTGAA
TGTGCCTTTGTCTTTGATTCAACGGCTCAGAGGTATTAGTGGCTTTTATCCTAATGGGAT
AACATTTAGCCTTTCAGCAGTAGAAATCTTAATTTTATTTGTAGACGAAGTAGTGGACAT
TGGAAATATGAGTGTCTTGAAAAGTGATTGGGCATTTTTATTGGGCCTGTTCCTCCCCAG
CCATTTAAAAGTTAACCAGTGGGCACCAGATAACAGTGCATGAAACCACATCGAGGATCT
GAACTGAGAACAGAGCGCAGTGGCTATTCTCGCTCCTCCCAAATGGTATACCAATTACAC
AAATTTGAATTAGTCACTCTGCACCCATTTGCAGTGCTCCTTGGGCACATGCTTTTAGAG
TTGTGTTGTGTGCAGTGTACCTAAGTGTTGCTGTAACCCTGGGTGTTCCAGCTGAGATGT
TATTTGAAGGCACAAGCAGAGACTAATCCTTGGAATCTTAAGTTGTTTACAGAAGGACCT
CCATGTCCTGTTTGGTTATTTTCTCTTTTATTTTGTCTTTTCCTCTCATCCTTAGTATGC
AAACAGGAATTTTANGGTGGGGACAAAAATCCAGAAGTGCTAAAAATAAGTCACCTTGGC
TGTAGGTATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGTAGTAAATGCCATTTAAAAACTAAATATTAAAATGTTGAAATTTGGGGGATTTATG
TTAACAGTTAACACTGTTATCTTGAGCTTTAATGCTGTAAATATTTCGCTCTCTACTAGG
TTTTCAGGACTGACTGACATCACCCTCAATTAAAATTCTTTATTTTTATCGGCCTAATTT
CAGGTGAACATGCCACACCTCACGCTTGTGCAGACCTGCGTTAAAAGGCTGGAGGGCTCT
TGTGTCCAGGTCCTTCCTGTCAGCCCGTGTCACAAGTAAATCACATCATAGTCTCTTGAA
TGTGCCTTTGTCTTTGATTCAACGGCTCAGAGGTATTAGTGGCTTTTATCCTAATGGGAT
AACATTTAGCCTTTCAGCAGTAGAAATCTTAATTTTATTTGTAGACGAAGTAGTGGACAT
TGGAAATATGAGTGTCTTGAAAAGTGATTGGGCATTTTTATTGGGCCTGTTCCTCCCCAG
CCATTTAAAAGTTAACCAGTGGGCACCAGATAACAGTGCATGAAACCACATCGAGGATCT
GAACTGAGAACAGAGCGCAGTGGCTATTCTCGCTCCTCCCAAATGGTATACCAATTACAC
AAATTTGAATTAGTCACTCTGCACCCATTTGCAGTGCTCCTTGGGCACATGCTTTTAGAG
TTGTGTTGTGTGCAGTGTACCTAAGTGTTGCTGTAACCCTGGGTGTTCCAGCTGAGATGT
TATTTGAAGGCACAAGCAGAGACTAATCCTTGGAATCTTAAGTTGTTTACAGAAGGACCT
CCATGTCCTGTTTGGTTATTTTCTCTTTTATTTTGTCTTTTCCTCTCATCCTTAGTATGC
AAACAGGAATTTTANGGTGGGGACAAAAATCCAGAAGTGCTAAAAATAAGTCACCTTGGC
TGTAGGTATTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               41-152, - strand, RNAz p=0.872924

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-152, - strand, RNAz p=0.872924

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-876, gnl|bosTau2|chr23 (5351851-5352709)
               

               
               5-876, gnl|Hg17|chr6 (53499176-53498222)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-876, gnl|bosTau2|chr23 (5351851-5352709)
               

               
               5-876, gnl|Hg17|chr6 (53499176-53498222)

	5-876, gnl\|bosTau2\|chr23 (5351851-5352709)
	5-876, gnl\|Hg17\|chr6 (53499176-53498222)