Non-Coding RNA Search

Ss1.1-Tra1-TCH01H070010.5

Sequence:


               
               GAGTGCAGGCGTTAAACGGACAGTGAGGTCACGAGATCACAGTTTTCCAGGAATCGAGGC
CAAAGGTATGAACAAGGCATAAGTTCTGAAGGGAAGATTTTTGTAAGGATGGACCCACGC
CAGAAGGTCTCCAACATATATAATGGCAATACTTTACAGATTCCTGGGTATGAAAAAGCT
TCTCAGTATGAGGACCAGTTGGAAAGGCATGAGGACAGGCCTGCAGAAGAAAGACGGTAT
AAATGCACTGAATGTGGAAAGAAGTTTGCACAGAGCTCGGGCCTTGTTCGACATCGGAGA
ATCCACACTGGAGAGAAACCCTACGAGTGTGATCACTGTGGAAAAGCCTTCAGTGTGCGC
TCAACCCTCACTGTGCATGAAAGAATCCACACCGGTGAGAAACCCTATACTTGTAATGAG
TGTAGGAAAGCATTCAGTGTGAGGGCGCACCTGATTATACATCAGAGAATCCACAATGGA
GAGAAACCCTATGAATGTAACGAATGTGGCAAAGCATTTAGTGTAAGCTCAGACCTCATC
AAACATCAGAGGATCCACTCTGGTGAAAAACCTTATGAGTGTGATGAGTGTGGAAAAGCC
TTCAGTGTGAGCTCAGCCCTCATCAAACATCAGAGAATCCACACAGGAGAGAAGCCATAT
GAGTGTAAGGAGTGTGGGAAGGCCTTCTATGTGAACTCAGCCCTTATTAATCACCAGAGG
ATTCATTCTGGAGAAAAGCCCTATAAATGTGGAGAATGCAGGAAAGCATTCAGCCAGATC
TCAACCCTTATCCATCATCAGAGAATCCATACTGGAGAGAAACCATACGAGTGTGATGAA
TGTGGGAAAGCATTCCGAGGGAGCTCTAATCTTACTAAACACCAGAAAATACATGCCAAA
GGAAAGTGTCATCAGTGATTTATACAGTGAAGATATTACAAAGGCCTTTTTTAAAATCAG
AAGTTGTCACTAAAAATGTAGGGTATGATAAAAGTTAATGTTTTAGTGGACACTTCATTT
CTTGGAATATTGAAGAAGTGAGAAGTCAATAAAAAATGACTGCATCATCGTAATGATTGA
CTAAGGCTCTAAAATCACATCTACCTCTGAGGATGCAGTTTTACAACTCATAAGGTAAAT
TATACCGTAATGTAGTTTGTTATCGTTTAGTAAGAACAAACTTGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGCAGGCGTTAAACGGACAGTGAGGTCACGAGATCACAGTTTTCCAGGAATCGAGGC
CAAAGGTATGAACAAGGCATAAGTTCTGAAGGGAAGATTTTTGTAAGGATGGACCCACGC
CAGAAGGTCTCCAACATATATAATGGCAATACTTTACAGATTCCTGGGTATGAAAAAGCT
TCTCAGTATGAGGACCAGTTGGAAAGGCATGAGGACAGGCCTGCAGAAGAAAGACGGTAT
AAATGCACTGAATGTGGAAAGAAGTTTGCACAGAGCTCGGGCCTTGTTCGACATCGGAGA
ATCCACACTGGAGAGAAACCCTACGAGTGTGATCACTGTGGAAAAGCCTTCAGTGTGCGC
TCAACCCTCACTGTGCATGAAAGAATCCACACCGGTGAGAAACCCTATACTTGTAATGAG
TGTAGGAAAGCATTCAGTGTGAGGGCGCACCTGATTATACATCAGAGAATCCACAATGGA
GAGAAACCCTATGAATGTAACGAATGTGGCAAAGCATTTAGTGTAAGCTCAGACCTCATC
AAACATCAGAGGATCCACTCTGGTGAAAAACCTTATGAGTGTGATGAGTGTGGAAAAGCC
TTCAGTGTGAGCTCAGCCCTCATCAAACATCAGAGAATCCACACAGGAGAGAAGCCATAT
GAGTGTAAGGAGTGTGGGAAGGCCTTCTATGTGAACTCAGCCCTTATTAATCACCAGAGG
ATTCATTCTGGAGAAAAGCCCTATAAATGTGGAGAATGCAGGAAAGCATTCAGCCAGATC
TCAACCCTTATCCATCATCAGAGAATCCATACTGGAGAGAAACCATACGAGTGTGATGAA
TGTGGGAAAGCATTCCGAGGGAGCTCTAATCTTACTAAACACCAGAAAATACATGCCAAA
GGAAAGTGTCATCAGTGATTTATACAGTGAAGATATTACAAAGGCCTTTTTTAAAATCAG
AAGTTGTCACTAAAAATGTAGGGTATGATAAAAGTTAATGTTTTAGTGGACACTTCATTT
CTTGGAATATTGAAGAAGTGAGAAGTCAATAAAAAATGACTGCATCATCGTAATGATTGA
CTAAGGCTCTAAAATCACATCTACCTCTGAGGATGCAGTTTTACAACTCATAAGGTAAAT
TATACCGTAATGTAGTTTGTTATCGTTTAGTAAGAACAAACTTGAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826239|ref|XP_591801.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826239|ref|XP_591801.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               319-638, - strand, RNAz p=0.982245
               

               
               719-838, - strand, RNAz p=0.612078
               

               
               953-1150, + strand, RNAz p=0.939779

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-638, - strand, RNAz p=0.982245
               

               
               719-838, - strand, RNAz p=0.612078
               

               
               953-1150, + strand, RNAz p=0.939779

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               45-1182, gnl|bosTau2|chr23 (24547519-24546378)
               


               
               156-907, gnl|bosTau2|chr18 (51368001-51367250)
               

               
               156-907, gnl|Mm7|chr13 (64564190-64563443)
               


               
               207-906, gnl|bosTau2|chr11 (74555043-74554344)
               

               
               207-906, gnl|Hg17|chr9 (127286163-127286862)
               

               
               207-906, gnl|Mm7|chr11 (62796245-62795546)
               


               
               208-893, gnl|bosTau2|chr10 (8996867-8996182)
               

               
               208-893, gnl|Hg17|chr19 (42818672-42817903)
               

               
               208-893, gnl|Mm7|chr2 (127310298-127309672)
               


               
               224-889, gnl|bosTau2|chr10 (8996767-8996102)
               

               
               224-889, gnl|Hg17|chr19 (42818572-42817823)
               

               
               224-889, gnl|Mm7|chr2 (127310198-127309617)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-1182, gnl|bosTau2|chr23 (24547519-24546378)
               


               
               156-907, gnl|bosTau2|chr18 (51368001-51367250)
               

               
               156-907, gnl|Mm7|chr13 (64564190-64563443)
               


               
               207-906, gnl|bosTau2|chr11 (74555043-74554344)
               

               
               207-906, gnl|Hg17|chr9 (127286163-127286862)
               

               
               207-906, gnl|Mm7|chr11 (62796245-62795546)
               


               
               208-893, gnl|bosTau2|chr10 (8996867-8996182)
               

               
               208-893, gnl|Hg17|chr19 (42818672-42817903)
               

               
               208-893, gnl|Mm7|chr2 (127310298-127309672)
               


               
               224-889, gnl|bosTau2|chr10 (8996767-8996102)
               

               
               224-889, gnl|Hg17|chr19 (42818572-42817823)
               

               
               224-889, gnl|Mm7|chr2 (127310198-127309617)

	319-638, - strand, RNAz p=0.982245
	719-838, - strand, RNAz p=0.612078
	953-1150, + strand, RNAz p=0.939779

	45-1182, gnl\|bosTau2\|chr23 (24547519-24546378)

	156-907, gnl\|bosTau2\|chr18 (51368001-51367250)
	156-907, gnl\|Mm7\|chr13 (64564190-64563443)

	207-906, gnl\|bosTau2\|chr11 (74555043-74554344)
	207-906, gnl\|Hg17\|chr9 (127286163-127286862)
	207-906, gnl\|Mm7\|chr11 (62796245-62795546)

	208-893, gnl\|bosTau2\|chr10 (8996867-8996182)
	208-893, gnl\|Hg17\|chr19 (42818672-42817903)
	208-893, gnl\|Mm7\|chr2 (127310298-127309672)

	224-889, gnl\|bosTau2\|chr10 (8996767-8996102)
	224-889, gnl\|Hg17\|chr19 (42818572-42817823)
	224-889, gnl\|Mm7\|chr2 (127310198-127309617)